PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30797.7 Da PI: 8.6785 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed lv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Gh_D03G1250 10 KGPWTEQEDAVLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4e-16 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r +++++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++ Gh_D03G1250 63 REKMSPQEQRLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108 6799******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.923 | 5 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.45E-29 | 9 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.3E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-20 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.29E-11 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.814 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 63 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.76E-11 | 65 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 65 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MKAEQEETRK GPWTEQEDAV LVNFVHLFGD RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKREKMSPQE QRLVLELHAK WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQEKKKAMP 120 KSLSPSSSSS SITLSSSSST TTTTTTTTTV DSLPFSGTGK VSFYDTGGPK MAALGDKSST 180 DFKDEKGYYS MDDIWKDIDM SEENMIKPLS HNYSEEGCNI FCPSMASPSL DYCWDSLWKM 240 DDEDSKMFLP FSQSISCFEY GTSFFNKIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 5e-27 | 7 | 112 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-27 | 7 | 112 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-27 | 10 | 112 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ459143 | 2e-74 | AJ459143.1 Gossypium hirsutum partial myb115c gene, clone pGhMYB115c. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016740582.1 | 0.0 | PREDICTED: transcription factor MYB59-like isoform X1 | ||||
Swissprot | Q9LX82 | 3e-97 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A1U8NNK8 | 0.0 | A0A1U8NNK8_GOSHI; transcription factor MYB59-like isoform X1 | ||||
STRING | Gorai.003G136400.1 | 1e-177 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 6e-89 | myb domain protein 48 |
Publications ? help Back to Top | |||
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