PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G1190
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 769aa    MW: 85984.8 Da    PI: 6.6417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G1190genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS381.97.6e-1173967661373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+a++s+d+  a++l++++++++sp+gd  qRla+yf+ AL+arla++++++y +l +++ts    ++ l+a++++  v+P++k+  + a
  Gh_D03G1190 396 LRTLLILCAQAITSNDNVTAKELIKQIRQHSSPYGDGSQRLAHYFVDALEARLAGTGTQIYTSLIAKRTS---AADMLKAYQVYISVCPFVKVPIIFA 490
                  5789************************************************************999998...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N+ I +a+e+++++HiiDf+i +G++WpaL++ La+Rp+gpp+lRiTg++ p++g   +e+++etg+rL k++e+ +vpfe+++ +a+++e++++e+L
  Gh_D03G1190 491 NNYISKAAEKATKLHIIDFGIFYGFHWPALIHRLANRPGGPPKLRITGIEFPQPGfrPAEAVQETGRRLVKYCEHYNVPFEYHA-IAQKWETIRTEDL 587
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E++aVn+  +  +llde+v l+s+rd+vL+l+++++P+v+v++  + ++n++ F++rf eal ++salfd+ e+++++e++ r+++E+++ gr
  Gh_D03G1190 588 KINSDEVIAVNCLCRFRNLLDETVVLNSPRDTVLNLIRKINPDVFVHSVVNGSYNAPFFVTRFREALFHFSALFDMCETNVSHEDNMRSMLEQKFYGR 685
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  ei+n++aceg+er+er e++++W+ r ++aGF ++pl+ + +k +k  ++  +   ++v+ +  ++++gWk+r +++ SaW
  Gh_D03G1190 686 EIMNIIACEGTERVERPESYKQWQVRNMRAGFVQLPLNPELMKRVKERVKARYHSDFMVDVDGRWMLQGWKGRIIYASSAW 766
                  **************************************************999777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.503370747IPR005202Transcription factor GRAS
PfamPF035142.6E-114396766IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MDSHLTGFPH TVNGFKINDG YLLPNPNVYP KFEISDGVGS NDQSLNFSSL GVPFLPSLGL  60
GDSSFASILS MGSMGKDGDT FSPTDDTDVS DTVLKYISQV LLEEDMEEKP CMFHDSLALQ  120
AAEKSLYEVL GESYPPRDQA PVCVDPSVES PDNCSFGTSS DHSIHSGSSS CTSYSIESQW  180
NGDFSENNNR PSLLQTSIPE NFVFQSTVDP GSRFSSHSQN GSANNGNGFM GSPASEFLVP  240
NYFSQSELAL HFKRGFEEAS KFLPKGNQLN VGFKSNALTS ELKQKASNTV VKVESDRKEY  300
SPPRLIRKKS HEREDEDLEE RNNKQSAVLG DESELSDMFD KVLICAGRRG QSSSSTADET  360
LPNGPSKTLL PNEQTNGSNS GKARGKKQGK KKVVDLRTLL ILCAQAITSN DNVTAKELIK  420
QIRQHSSPYG DGSQRLAHYF VDALEARLAG TGTQIYTSLI AKRTSAADML KAYQVYISVC  480
PFVKVPIIFA NNYISKAAEK ATKLHIIDFG IFYGFHWPAL IHRLANRPGG PPKLRITGIE  540
FPQPGFRPAE AVQETGRRLV KYCEHYNVPF EYHAIAQKWE TIRTEDLKIN SDEVIAVNCL  600
CRFRNLLDET VVLNSPRDTV LNLIRKINPD VFVHSVVNGS YNAPFFVTRF REALFHFSAL  660
FDMCETNVSH EDNMRSMLEQ KFYGREIMNI IACEGTERVE RPESYKQWQV RNMRAGFVQL  720
PLNPELMKRV KERVKARYHS DFMVDVDGRW MLQGWKGRII YASSAWIPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5440376826380Protein SCARECROW
5b3h_A9e-5540376825379Protein SCARECROW
5b3h_D9e-5540376825379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.27680.0boll| ovule
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740419.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1U8NR320.0A0A1U8NR32_GOSHI; scarecrow-like protein 33
STRINGGorai.003G130600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]