PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G1189

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 759aa MW: 85464.6 Da PI: 4.9977

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G1189	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.1	2.6e-109	382	756	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avs++d + a++lL++++e++sp+gd++qRla f+ +L+arl +s+ + ++ +++ ++ ++ l+a+k++ +P+ k++ l a Gh_D03G1189 382 LRTLLILCAQAVSADDRRTASELLKQIKEHSSPHGDANQRLAYIFADGLEARLDGSGALIHVFYASLASKMTTAADILKAYKAYLCSCPFTKLAILFA 479 5789*************************************************777776666777777777********************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N+ I+ +e+++ +Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+ g +e++eetg+rLak++e+++vpfe+n++v++++e++++e++ Gh_D03G1189 480 NKSIYHMAEKASVLHIVDFGILYGFQWPILIQHLSTRPGGPPKLRITGIEIPQRGfrPAERIEETGRRLAKYCERFNVPFEYNPIVVEHWETIQIEDI 577 *************************************************99*************************************** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+laVn+ ++ h+llde+++++ +r+++Lkl+++++P+++v++ + +n++ F++rf e l + sa+fd +e++lpre+ +r + Ere+ gr Gh_D03G1189 578 KIDSNEMLAVNSLFRFHNLLDETADVDCPRNAMLKLIRKMKPDIFVHSIVNGAYNAPFFVTRFKEVLFHISAVFDVFENTLPREEPARLMFEREFYGR 675 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e++nv+aceg++r++r et+++W+ r + GFkp+pl+++ +k + l+ + + + ++e+++++++gWk+r L+ S+W Gh_D03G1189 676 EAMNVIACEGSARVQRPETYKQWQIRTLREGFKPLPLDQELMKIIIDKLKAWYHKDFVIDEDNHWMLQGWKGRILYGSSCW 756 ***********************************************99888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.378	356	737	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.2E-107	382	756	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MTMDPNSIEI SDYLNCFKVE DHRVHNGFEF NVPSPDLNFM NMKVPIIPPD SDPGINVPSI 60 TASSDGSSFS ASTGWSPLGE SYSPPSDSDS TDPVLKYISQ MLMEENMEDK PYMFNDYLAL 120 EDTEKSLYDA LVSNIIQPVK VESPDSNLFG TNGHSDASIS SRSGTSDHID PRGIGEGGGP 180 DPSLLQAPYS LQPDLQQSSS QFSVDSVNSL SNIGNGLMES SVSELLVKNI FSDKESVLQF 240 QRGFEEASKF IPSGELVVDL ESSTFAVGKK VDVPKVVVKV EKDEREISSN GLTGRKNHER 300 DDWELEDERS NKQSATYTEE SDLSEVFDKV LLCTEGKTMC GIDQTVQHGE TDSSQHKEQL 360 DGSIVGRNRS KRRGKKKEVV DLRTLLILCA QAVSADDRRT ASELLKQIKE HSSPHGDANQ 420 RLAYIFADGL EARLDGSGAL IHVFYASLAS KMTTAADILK AYKAYLCSCP FTKLAILFAN 480 KSIYHMAEKA SVLHIVDFGI LYGFQWPILI QHLSTRPGGP PKLRITGIEI PQRGFRPAER 540 IEETGRRLAK YCERFNVPFE YNPIVVEHWE TIQIEDIKID SNEMLAVNSL FRFHNLLDET 600 ADVDCPRNAM LKLIRKMKPD IFVHSIVNGA YNAPFFVTRF KEVLFHISAV FDVFENTLPR 660 EEPARLMFER EFYGREAMNV IACEGSARVQ RPETYKQWQI RTLREGFKPL PLDQELMKII 720 IDKLKAWYHK DFVIDEDNHW MLQGWKGRIL YGSSCWVPA

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MTMDPNSIEI SDYLNCFKVE DHRVHNGFEF NVPSPDLNFM NMKVPIIPPD SDPGINVPSI  60
TASSDGSSFS ASTGWSPLGE SYSPPSDSDS TDPVLKYISQ MLMEENMEDK PYMFNDYLAL  120
EDTEKSLYDA LVSNIIQPVK VESPDSNLFG TNGHSDASIS SRSGTSDHID PRGIGEGGGP  180
DPSLLQAPYS LQPDLQQSSS QFSVDSVNSL SNIGNGLMES SVSELLVKNI FSDKESVLQF  240
QRGFEEASKF IPSGELVVDL ESSTFAVGKK VDVPKVVVKV EKDEREISSN GLTGRKNHER  300
DDWELEDERS NKQSATYTEE SDLSEVFDKV LLCTEGKTMC GIDQTVQHGE TDSSQHKEQL  360
DGSIVGRNRS KRRGKKKEVV DLRTLLILCA QAVSADDRRT ASELLKQIKE HSSPHGDANQ  420
RLAYIFADGL EARLDGSGAL IHVFYASLAS KMTTAADILK AYKAYLCSCP FTKLAILFAN  480
KSIYHMAEKA SVLHIVDFGI LYGFQWPILI QHLSTRPGGP PKLRITGIEI PQRGFRPAER  540
IEETGRRLAK YCERFNVPFE YNPIVVEHWE TIQIEDIKID SNEMLAVNSL FRFHNLLDET  600
ADVDCPRNAM LKLIRKMKPD IFVHSIVNGA YNAPFFVTRF KEVLFHISAV FDVFENTLPR  660
EEPARLMFER EFYGREAMNV IACEGSARVQ RPETYKQWQI RTLREGFKPL PLDQELMKII  720
IDKLKAWYHK DFVIDEDNHW MLQGWKGRIL YGSSCWVPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-45	371	758	7	379	Protein SCARECROW
5b3h_D	6e-45	371	758	7	379	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	366	371	RNRSKR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016740417.1	0.0	PREDICTED: scarecrow-like protein 33
Refseq	XP_016740418.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1U8NQS4	0.0	A0A1U8NQS4_GOSHI; scarecrow-like protein 33
STRING	Gorai.003G130500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]