PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G1095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 240aa MW: 27832.7 Da PI: 6.3137 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.9 | 3.1e-26 | 131 | 181 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAke++v+lT+LK++CR+++I+RWPhRkiksl Gh_D03G1095 131 TASLELDEIQKYFDFPISKAAKEMNVGLTLLKKRCRELNIMRWPHRKIKSL 181 6899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.018 | 121 | 202 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.1E-22 | 134 | 181 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MGLDFAKMEN GSEFDYCFNF EENPFGKVEF EVDSFYDFNS PALLPHPQAD NLCIQFMDFE 60 EISSDFALFD QNEDIMVDAK PIKAVVDSFD HHCGNITNSG GSSTEASRVI HEIEYGDSHG 120 QKIRSFRRKR TASLELDEIQ KYFDFPISKA AKEMNVGLTL LKKRCRELNI MRWPHRKIKS 180 LKSLIHNVKE LGLTNEIVML EEHQRMLEKV PDPELTDRTK KLRQACFKAN YKKRSLASCY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012471149.1 | 1e-179 | PREDICTED: protein RKD4 | ||||
TrEMBL | A0A0D2QS71 | 1e-177 | A0A0D2QS71_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G121600.1 | 1e-178 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-44 | RWP-RK domain-containing protein |