PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0895
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 419aa    MW: 46158.5 Da    PI: 7.0909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0895genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.66.3e-15228273555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRR+ri++++++L++l+P+a      K +Ka++L +++eY+k+Lq
  Gh_D03G0895 228 HNLSERRRRHRIKQKMNTLQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 273
                  9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-18221291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.212223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-18228292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-15228277No hitNo description
PfamPF000101.8E-12228273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-16229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSHCVAPNCW NLKHQSQEQV HFEEEEDNET NRSSHISNPM SNHEVAELTW QNGQLAFHGL  60
NRHLPTASSK PTWGISGDTL ESIVHQATCL HTQNHNFSLL QHDQNQTPAV VSSIAASSGS  120
SGRLPTAAVV KKRARSSSDV CGEIPRGGVG EEYASACASA SDAFCKENDD STMMTWASHL  180
SPQTMKAKAV DEDYTYQDGL ENQDEEQETR GETGRSQATR RSRASAIHNL SERRRRHRIK  240
QKMNTLQKLV PNASKTDKAS MLDEVIEYLK QLQTQVEMMS MRNMAAQMMM QKTRRQLQMS  300
ALARMGVGMG IGILDDNNSL APNPSPVTAP THTFLPPPPP SFVTPPPMIP TRFAAAAQAN  360
SDASSHGSIP SPDPYCTLLA QSMNMELYNN KMAALYRPQI NQTTQTSSNP SRSNNVAKD
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738476840.0
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740057.10.0PREDICTED: transcription factor PIF7-like isoform X2
TrEMBLA0A1U8NM080.0A0A1U8NM08_GOSHI; transcription factor PIF7-like isoform X2
STRINGGorai.003G099500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-31bHLH family protein