PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0859
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 91aa    MW: 10359.7 Da    PI: 9.2512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0859genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-0820591554
                 HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                 +i +  ++L++llP+ + + +s K+s a +L+++++YI+sL
  Gh_D03G0859 20 QIYDLVSKLQQLLPEvR-NRHSDKVSAAKVLQETCNYIRSL 59
                 6777889********65.99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.3E-9478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.785559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-91977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-52059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSSRRSRSRQ SSGSRITDDQ IYDLVSKLQQ LLPEVRNRHS DKVSAAKVLQ ETCNYIRSLH  60
REVDDLSERL SELLATTDSA QAAVIRSLLM Q
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16527868}.
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470738.14e-58PREDICTED: transcription factor ILI6-like
RefseqXP_016741278.14e-58PREDICTED: transcription factor ILI6-like
SwissprotF4JCN96e-38PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0D2QI208e-57A0A0D2QI20_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NT888e-57A0A1U8NT88_GOSHI; transcription factor ILI6-like
TrEMBLA0A2P5SRU38e-57A0A2P5SRU3_GOSBA; Uncharacterized protein
STRINGGorai.003G095400.11e-57(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.13e-37activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]