PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D03G0850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 179aa MW: 21000.9 Da PI: 9.685 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.1 | 2e-20 | 90 | 143 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k Gh_D03G0850 90 KKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 143 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.7 | 2.3e-36 | 89 | 158 | 1 | 70 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkray 70 ekkrrl+ +q+++LE+sFe ++kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L + + Gh_D03G0850 89 EKKRRLTVDQIQFLEKSFEVDNKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDTLLAMF 158 69***************************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-20 | 77 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.508 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-20 | 88 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.07E-17 | 90 | 146 | No hit | No description |
Pfam | PF00046 | 9.1E-18 | 90 | 143 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 92 | 152 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.4E-6 | 116 | 125 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.4E-6 | 125 | 141 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence Send to blast |
MAGGRVYPSN NDTTDGVPNN LSVLLQNQRL HPLFIPGSSP SPSFLGTRSM VSFEDSLKTN 60 RPKRSIFKMF DEQENGYDEY LEECFHQPEK KRRLTVDQIQ FLEKSFEVDN KLEPERKIQL 120 AKDLGLQPRQ VAIWFQNRRA RWKTKQLEKD YDTLLAMFFN SQISCKRKKM SEGTQNFLM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 137 | 145 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016740108.1 | 1e-113 | PREDICTED: homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | Q8LC03 | 2e-33 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A1U8NPV5 | 1e-112 | A0A1U8NPV5_GOSHI; homeobox-leucine zipper protein HAT5-like | ||||
STRING | Gorai.003G094500.1 | 1e-110 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM545 | 28 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69780.1 | 7e-36 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|