PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 1006aa MW: 111275 Da PI: 6.4202 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 64.4 | 1.8e-20 | 585 | 633 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++ + vc+T++K+iCRq+GI+RWP+Rki+++ Gh_D03G0813 585 EKSISLEVLQQYFAGSLXYSC--FTVCPTTMKQICRQHGISRWPSRKINKV 633 799**************9865..88************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 12.537 | 570 | 653 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.9E-16 | 588 | 633 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 7.2E-24 | 906 | 995 | No hit | No description |
PROSITE profile | PS51745 | 26.356 | 910 | 992 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 1.9E-28 | 910 | 992 | No hit | No description |
SMART | SM00666 | 1.2E-26 | 910 | 992 | IPR000270 | PB1 domain |
Pfam | PF00564 | 1.5E-18 | 911 | 991 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.53E-39 | 911 | 991 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1006 aa Download sequence Send to blast |
MCEPVEGNAC SFPSKQYRHH HLEQSQGIMD LDDLDLESSW PLDHQSFLSN PTSPFILASS 60 SEQPCSPLWV FSDDDNNKLG SHPVDCNLLV TCIPNPGNEY PKEENDNRGM PSPFLGQLPL 120 ENPDSYCVIK QRMTKALRYF KESTEQHVLA QVWAPVKNGG RYVLTTSGQP FVLDPHSSGL 180 HQYRMVSLMY MFSVDGESDV QLGLPGRVFR QKLPEWTPNV QYYSSREYSR RDHALHYNVQ 240 GTLALPVFEP SKQSCVGVLE LIMTSPMIHY APEVDKVCKA LEAANLKSSE ILDHPSTKIC 300 NKSRQNALAE ILEILTMVCE THKLPLAQTW VPCRHRNVLA HGGGSKKYCT SFDGSCMGQV 360 CISTTDVAFY VVDAHMWGFR EACLEHHLQK GQGVSGRAFL SHNPCFCADI TQFCKTEYPL 420 VHYARMFGLT SCFAICLQST YTGDDDYVLE FFLPPAIADF NEQQTLLGSI LSTIKQHFQC 480 IKVAPGTKLK ENKGYIEIII ASSDERLSSR LEFIPISPSV KSPPGTNSSP NRGDLQIDSL 540 RKQLSDNHDP ATDGSKVVAS GSQDPVCLPK NEELKKPERK HGKTEKSISL EVLQQYFAGS 600 LXYSCFTVCP TTMKQICRQH GISRWPSRKI NKVNRSLTKL KHVIESVQGA DEAFDLTSLA 660 TSPLPVAVGS ISWTTGLNGS HQQNLTNSKP SEPQVDKNDL PTCQMPGSNT QVLVDDQLLG 720 GRTLIQEQLF PHHNGLSPSL DKGANRFKTG SGSRDESAGT PTSHGSCQGS PATESAATKD 780 PLGFSHDQCS PKLAFHLEEL NISTSFSMPE APVTAEPREP FGGMLVEDAG SSKDLRNLCP 840 IVAEIGADER LPESSWTPPQ CSELGIKHTM HTFTQTTPHV TARHXLGIKH TMHTFTQTTP 900 HVTARHGMKS VTIKATYRED IIRFRISLSS GIVELKEEVA KRLKLEVGTF DIKYLDDDNE 960 WVLIACDADL QECLDVSRSS GSNIIRLSVH DTVANLGSSC ESTGEL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3955 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016740397.1 | 0.0 | PREDICTED: protein NLP6-like isoform X1 | ||||
Swissprot | Q84TH9 | 0.0 | NLP7_ARATH; Protein NLP7 | ||||
TrEMBL | A0A1U8NN31 | 0.0 | A0A1U8NN31_GOSHI; protein NLP6-like isoform X1 | ||||
STRING | Gorai.003G074300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24020.1 | 0.0 | NIN like protein 7 |