PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0813
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 1006aa    MW: 111275 Da    PI: 6.4202
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0813genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK64.41.8e-20585633252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek+isle+l++yF++++   +    vc+T++K+iCRq+GI+RWP+Rki+++
  Gh_D03G0813 585 EKSISLEVLQQYFAGSLXYSC--FTVCPTTMKQICRQHGISRWPSRKINKV 633
                  799**************9865..88************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.537570653IPR003035RWP-RK domain
PfamPF020423.9E-16588633IPR003035RWP-RK domain
SuperFamilySSF542777.2E-24906995No hitNo description
PROSITE profilePS5174526.356910992IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.9E-28910992No hitNo description
SMARTSM006661.2E-26910992IPR000270PB1 domain
PfamPF005641.5E-18911991IPR000270PB1 domain
CDDcd064072.53E-39911991No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MCEPVEGNAC SFPSKQYRHH HLEQSQGIMD LDDLDLESSW PLDHQSFLSN PTSPFILASS  60
SEQPCSPLWV FSDDDNNKLG SHPVDCNLLV TCIPNPGNEY PKEENDNRGM PSPFLGQLPL  120
ENPDSYCVIK QRMTKALRYF KESTEQHVLA QVWAPVKNGG RYVLTTSGQP FVLDPHSSGL  180
HQYRMVSLMY MFSVDGESDV QLGLPGRVFR QKLPEWTPNV QYYSSREYSR RDHALHYNVQ  240
GTLALPVFEP SKQSCVGVLE LIMTSPMIHY APEVDKVCKA LEAANLKSSE ILDHPSTKIC  300
NKSRQNALAE ILEILTMVCE THKLPLAQTW VPCRHRNVLA HGGGSKKYCT SFDGSCMGQV  360
CISTTDVAFY VVDAHMWGFR EACLEHHLQK GQGVSGRAFL SHNPCFCADI TQFCKTEYPL  420
VHYARMFGLT SCFAICLQST YTGDDDYVLE FFLPPAIADF NEQQTLLGSI LSTIKQHFQC  480
IKVAPGTKLK ENKGYIEIII ASSDERLSSR LEFIPISPSV KSPPGTNSSP NRGDLQIDSL  540
RKQLSDNHDP ATDGSKVVAS GSQDPVCLPK NEELKKPERK HGKTEKSISL EVLQQYFAGS  600
LXYSCFTVCP TTMKQICRQH GISRWPSRKI NKVNRSLTKL KHVIESVQGA DEAFDLTSLA  660
TSPLPVAVGS ISWTTGLNGS HQQNLTNSKP SEPQVDKNDL PTCQMPGSNT QVLVDDQLLG  720
GRTLIQEQLF PHHNGLSPSL DKGANRFKTG SGSRDESAGT PTSHGSCQGS PATESAATKD  780
PLGFSHDQCS PKLAFHLEEL NISTSFSMPE APVTAEPREP FGGMLVEDAG SSKDLRNLCP  840
IVAEIGADER LPESSWTPPQ CSELGIKHTM HTFTQTTPHV TARHXLGIKH TMHTFTQTTP  900
HVTARHGMKS VTIKATYRED IIRFRISLSS GIVELKEEVA KRLKLEVGTF DIKYLDDDNE  960
WVLIACDADL QECLDVSRSS GSNIIRLSVH DTVANLGSSC ESTGEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.39550.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. Detected in root hairs, emerging secondary roots, vascular tissues, leaf parenchyma cells and stomata. {ECO:0000269|PubMed:18826430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269|PubMed:18826430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269|PubMed:18826430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740397.10.0PREDICTED: protein NLP6-like isoform X1
SwissprotQ84TH90.0NLP7_ARATH; Protein NLP7
TrEMBLA0A1U8NN310.0A0A1U8NN31_GOSHI; protein NLP6-like isoform X1
STRINGGorai.003G074300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25072666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.10.0NIN like protein 7
Publications ? help Back to Top
  1. Xu N, et al.
    The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators.
    Plant Cell, 2016. 28(2): p. 485-504
    [PMID:26744214]
  2. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  3. Yu LH, et al.
    Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation.
    Sci Rep, 2016. 6: p. 27795
    [PMID:27293103]
  4. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]
  5. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]
  6. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  7. Liu KH, et al.
    Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks.
    Nature, 2017. 545(7654): p. 311-316
    [PMID:28489820]
  8. Li Z, et al.
    The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1.
    New Phytol., 2017. 216(4): p. 1205-1222
    [PMID:28850721]
  9. Cao H, et al.
    Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation.
    Front Plant Sci, 2017. 8: p. 1703
    [PMID:29051766]
  10. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]
  11. Karve RA,Iyer-Pascuzzi AS
    Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release.
    Plant Signal Behav, 2018. 13(1): p. e1414122
    [PMID:29215953]
  12. Zhao L, et al.
    The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium.
    Sci Rep, 2018. 8(1): p. 1487
    [PMID:29367694]