PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G0792

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 842aa MW: 92229.9 Da PI: 5.0358

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0792	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	638	676	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLr ++P++ +k ls Le++++Y+ Lq Gh_D03G0792 638 RQLIQDRIKELRGIIPHN----GKPLSIDHLLEQTIKYLIFLQ 676 67799**********9....788************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.8E-7	10	48	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	5.3E-14	58	150	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	9.248	625	675	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MGEAEKGSML KQTLKNLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLFNSILQK 60 FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QDESELQNQF SCGIKTIAII 120 SLGRQGMVQV GSTQKILERL DFLDETKKIF CDVGSFHGFT PLEIEACNQD DRFAALGSRG 180 NIYNENLATE LYGFPREPKG WPCSLKNATE SSIFMREIRD PSVNSVVQNL PHLRNQLQTS 240 NAEALSLSSG KISPVNCLAA YTPCTSTWRS EGSILTSFET SFPSESGIWD SPNMLPKAND 300 LAVSGNMEQK LQGASTFSSL YGIGELVDAE LPTLDSYGKT AEYQCSFGTN NGLLDDAINL 360 QRITEEFNPA DFTIDLCNSF NLDDLSQLFS PLPRHDINGT GATIISDVSS SVGVTSVSSA 420 LVGGDTLVDI PVRQTANSLQ SSITEASISN AEKSTIVHDN GTDLFDGVGL DYAFGKTGES 480 LEDIIVPLLH GDNSTVTLGL SETISQLDAR AMNGKRKGLF SELGLEKLLD GVNNSSHATK 540 SSVEDQLSIT KRRKTESSSS SFCQGQFVGH SYSAGSMNPV HHSHTIFNKD IHRKSQVGAW 600 IDDSCSVNGG QAVAATSKKP AKKRAKPGES TRPRPKDRQL IQDRIKELRG IIPHNGKPLS 660 IDHLLEQTIK YLIFLQGVTK YADKIKQADE PKIIGNEDGM LPKHNMISGG ATWAFEVGAQ 720 SIPIVVKDLN PPGQMLIEML CEDQGFFLEI ANVIRGIGLN ILRAVMELQE DKIWARFIVE 780 AKEQVERTCI IWSLLPLLQQ TGGSGIDSAS QPSNDVNGGI PLSNNYLQPF PLPPLNTAET 840 FQ

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MGEAEKGSML KQTLKNLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLFNSILQK  60
FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QDESELQNQF SCGIKTIAII  120
SLGRQGMVQV GSTQKILERL DFLDETKKIF CDVGSFHGFT PLEIEACNQD DRFAALGSRG  180
NIYNENLATE LYGFPREPKG WPCSLKNATE SSIFMREIRD PSVNSVVQNL PHLRNQLQTS  240
NAEALSLSSG KISPVNCLAA YTPCTSTWRS EGSILTSFET SFPSESGIWD SPNMLPKAND  300
LAVSGNMEQK LQGASTFSSL YGIGELVDAE LPTLDSYGKT AEYQCSFGTN NGLLDDAINL  360
QRITEEFNPA DFTIDLCNSF NLDDLSQLFS PLPRHDINGT GATIISDVSS SVGVTSVSSA  420
LVGGDTLVDI PVRQTANSLQ SSITEASISN AEKSTIVHDN GTDLFDGVGL DYAFGKTGES  480
LEDIIVPLLH GDNSTVTLGL SETISQLDAR AMNGKRKGLF SELGLEKLLD GVNNSSHATK  540
SSVEDQLSIT KRRKTESSSS SFCQGQFVGH SYSAGSMNPV HHSHTIFNKD IHRKSQVGAW  600
IDDSCSVNGG QAVAATSKKP AKKRAKPGES TRPRPKDRQL IQDRIKELRG IIPHNGKPLS  660
IDHLLEQTIK YLIFLQGVTK YADKIKQADE PKIIGNEDGM LPKHNMISGG ATWAFEVGAQ  720
SIPIVVKDLN PPGQMLIEML CEDQGFFLEI ANVIRGIGLN ILRAVMELQE DKIWARFIVE  780
AKEQVERTCI IWSLLPLLQQ TGGSGIDSAS QPSNDVNGGI PLSNNYLQPF PLPPLNTAET  840
FQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016741130.1	0.0	PREDICTED: transcription factor bHLH157-like
TrEMBL	A0A1U8NQL2	0.0	A0A1U8NQL2_GOSHI; transcription factor bHLH157-like
STRING	Gorai.003G076000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15615	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	8e-48	conserved peptide upstream open reading frame 7