PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0721
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 327aa    MW: 36978.1 Da    PI: 5.715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0721genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18112162155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  +++a+ +l+g
  Gh_D03G0721 112 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYNTAEEAAMVYDKAAIQLRG 162
                  59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.99E-32112169No hitNo description
Gene3DG3DSA:3.30.730.101.2E-29113170IPR001471AP2/ERF domain
PROSITE profilePS5103223.354113170IPR001471AP2/ERF domain
SMARTSM003806.9E-37113176IPR001471AP2/ERF domain
PfamPF008476.2E-12113162IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21113170IPR016177DNA-binding domain
PRINTSPR003677.1E-10114125IPR001471AP2/ERF domain
PRINTSPR003677.1E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDPCSVSLIK YTEHRNETKL LSPLVNGRVE NKPEMKPRIV RISVTDADAT DSSSDDEEET  60
RMIRRRSRNR VKKFVNEITI ESTNPTESRC VRKKPAAEKL KVKAAAKVPA GKKFRGVRQR  120
PWGKWAAEIR DPLRRVRLWL GTYNTAEEAA MVYDKAAIQL RGQDALTNFT TPPMKDENIS  180
QKQLSSSDYN SGEESHNSYL CSPTSVLRCP SLSIDEVDSQ SFEKSRETRN RPRDVPDDSC  240
CISGENLSDF SEHSSLFPGD IFSSVPSLFD DHTSLHEGFL KDDFGYWYLS SGGDFEFGFG  300
TFSSWPHVDD HFQDIGDLFG SDPPLAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20111169362ATERF1
3gcc_A1e-20111169362ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.237370.0boll
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741187.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotQ9SUQ23e-63CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A1U8NQC80.0A0A1U8NQC8_GOSHI; ethylene-responsive transcription factor CRF1-like
STRINGGorai.003G082200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-56cytokinin response factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ckurshumova W,Berleth T
    Overcoming recalcitrance - Auxin response factor functions in plant regeneration.
    Plant Signal Behav, 2015. 10(7): p. e993293
    [PMID:26098229]
  4. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  5. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]