PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 427aa MW: 47343.7 Da PI: 8.6838 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.3e-13 | 64 | 128 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse..ng....kr...krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ n+ k+ +++ g ++ +e Aa+a++ a++k++g Gh_D03G0620 64 SIYRGVTRHRWTGRYEAHLWDkSTWnqNQnkkgKQglsQHIFSGAYDDEEAAARAYDLAALKYWG 128 57*******************7777752277773367788888********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-13 | 64 | 137 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-9 | 64 | 128 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-12 | 65 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.517 | 65 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-18 | 65 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 66 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 118 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MASTSSSDPG MKAEASGGEN SETVIANDQL LLCRGLKKAK KERGCTAKER ISKMPPCTAG 60 KRSSIYRGVT RHRWTGRYEA HLWDKSTWNQ NQNKKGKQGL SQHIFSGAYD DEEAAARAYD 120 LAALKYWGPG TLINFPVTDY TRDLEEMQNV SREDYLASLR RKSSGFSRGI SKYRGLSSRR 180 WDSSFGRVSG SEYFNSIHYG DDTTKENDYI GGFCIERKID LTGYIKWWGT NKTRQAEAGT 240 KSSEETKNAC PEDIGSELKT SEWAVQPTEP YQMPRLGTSL EGTKCKGSSV SALSILSRSA 300 DFKSLQEKAL KKQEQNSDND ENENKNTINK MDYGKAAEKS VNNDTGGDRL GAAMGMTGGL 360 SSLQKNVFPL TPFLSAPLLT NYNTIDSLVD PVLWTSLVPA LPTGPSRNPE VTKTETSSTY 420 TFFRPEE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.4744 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012470674.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Refseq | XP_016734840.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-167 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A0D2QQL8 | 0.0 | A0A0D2QQL8_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8N7A1 | 0.0 | A0A1U8N7A1_GOSHI; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
STRING | Gorai.003G091500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10815 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-156 | AP2 family protein |