PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0375
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 321aa    MW: 35810.2 Da    PI: 7.8978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0375genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12120170154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +r+ h ++Er+RR+++N+ ++ Lr+++P++   + ++ + a+i   A++++k L
  Gh_D03G0375 120 QRMIHIAVERNRRRQMNDYLAVLRTMMPNS---YVQRGDQASIIGGAINFVKVL 170
                  6999**************************...9***************99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.00E-12118175No hitNo description
PROSITE profilePS5088814.437119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16119185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-12121183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-9125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MALEAVVFQR DPFCYGGSGP CNTYGVGFQQ QEEKANYSNN GEMVSKSGGG GTRGSSSSSF  60
MVHQKEWPWD FNSSSSPDIG FSTGGPIFSP TEAPAIDTRS CRRRRRRPKS VKNKEEIENQ  120
RMIHIAVERN RRRQMNDYLA VLRTMMPNSY VQRGDQASII GGAINFVKVL EQILQSLEAR  180
KRMEKRSDST TFSSLFSEFF SFPQYSTSIQ TETPGESTAE KWSFPSCSSS SSVADVEVTM  240
VDSHANVKIL SKKHPKQLFN MVSGLHSLGL FVLHLNVTSV ENRVLYSLSV KVEENCQLNT  300
VNEIAAAVYE MVDKFQEEAA A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106RSCRRRRRR
2120131RMIHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016740759.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A1U8NS150.0A0A1U8NS15_GOSHI; transcription factor bHLH94-like
STRINGGorai.003G041800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2217045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-68bHLH family protein