PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G0265

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 292aa MW: 31783.8 Da PI: 10.5686

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0265	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.6	4.4e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+ I + R+ ++k++w++ Gh_D03G0265 5 KQKWTAEEEAALKAGVLKHGTGKWRNILSDPEfssvlRSRSNVDLKDKWRN 55 79************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.54	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-16	2	70	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-14	4	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-8	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	3.70E-18	6	57	No hit	No description
SMART	SM00526	4.6E-13	114	181	IPR005818	Linker histone H1/H5, domain H15
PROSITE profile	PS51504	22.159	115	186	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	5.99E-15	116	192	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.5E-13	120	188	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	1.1E-8	123	179	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRN ILSDPEFSSV LRSRSNVDLK DKWRNINATA 60 IWGSRQKAKL ALKRNQLAAK HDDNPMALIT VPPTEEVVDP KPLAISSRTP RVTGPKKPVS 120 RLENILLEAI TSLREPGGSD RASIALYIEE KYAAPLNLKK LLATKLKLLV ANGTLTKVKH 180 KYRIAPHSTI SETRSPLLAL EGRQKDSSKS EKKAINILTK TQVDVELSKM KTMTAEEAAA 240 AAARAVAEAE FAIAEAEKAA READAAEAEA EAAKIFAKAA AKALKSRMLV TW

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2146	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:15060584}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469638.1	0.0	PREDICTED: telomere repeat-binding factor 2-like isoform X1
Refseq	XP_016706223.1	0.0	PREDICTED: telomere repeat-binding factor 2-like isoform X1
Refseq	XP_017624387.1	0.0	PREDICTED: telomere repeat-binding factor 2-like isoform X1
Swissprot	Q9FJW5	4e-82	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	A0A1U8KYT6	0.0	A0A1U8KYT6_GOSHI; telomere repeat-binding factor 2-like isoform X1
STRING	Gorai.003G030800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3809	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	5e-72	MYB_related family protein

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]