PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D03G0202

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 102aa MW: 11671 Da PI: 4.0418

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D03G0202	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.7	2.5e-05	31	72	11	45
HHHHHHHHHH.....HSSS--HHHHHHHHHHC..TS-HHHHH CS Homeobox 11 qleeLeelFe.....knrypsaeereeLAkkl..gLterqVk 45 eeL ++F+ +n ++sa+++e++A++l +Lt++ ++ Gh_D03G0202 31 TKEELTKAFQiidqdNNGKISAQDIERIANELgvNLTKKEIQ 72 6799****999878**************9999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00054	0.0083	1	25	IPR002048	EF-hand domain
Pfam	PF00036	3.5E-7	1	24	IPR002048	EF-hand domain
Gene3D	G3DSA:1.10.238.10	3.9E-15	1	45	IPR011992	EF-hand domain pair
CDD	cd00051	7.39E-8	1	51	No hit	No description
SuperFamily	SSF47473	3.83E-32	1	98	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	13.091	1	28	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	6	18	IPR018247	EF-Hand 1, calcium-binding site
PROSITE profile	PS50222	13.481	30	65	IPR002048	EF-hand domain
Pfam	PF13499	3.1E-16	33	96	IPR002048	EF-hand domain
SMART	SM00054	0.0038	34	62	IPR002048	EF-hand domain
CDD	cd00051	1.98E-16	34	96	No hit	No description
PROSITE pattern	PS00018	0	43	55	IPR018247	EF-Hand 1, calcium-binding site
Gene3D	G3DSA:1.10.238.10	9.2E-23	46	97	IPR011992	EF-hand domain pair
PROSITE profile	PS50222	14.095	66	101	IPR002048	EF-hand domain
SMART	SM00054	3.9E-7	70	98	IPR002048	EF-hand domain
PROSITE pattern	PS00018	0	79	91	IPR018247	EF-Hand 1, calcium-binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005509	Molecular Function	calcium ion binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MIADVDKDGS GAIDFDEFVY MMTAKIGERD TKEELTKAFQ IIDQDNNGKI SAQDIERIAN 60 ELGVNLTKKE IQDMIEEADK DNDGEVSMDE FMRMMKRTTY GY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kf9_A	8e-39	1	100	49	148	Caltractin
3kf9_C	8e-39	1	100	49	148	Caltractin
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a fundamental role in microtubule-organizing center structure and function.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469537.1	4e-67	PREDICTED: caltractin-like
Refseq	XP_016690598.1	5e-67	PREDICTED: caltractin-like
Swissprot	P41210	2e-54	CATR_ATRNU; Caltractin
TrEMBL	A0A0D2RFE9	9e-66	A0A0D2RFE9_GOSRA; Uncharacterized protein
STRING	Gorai.003G023300.1	2e-66	(Gossypium raimondii)

Publications ? help Back to Top
Zhu JK,Bressan RA,Hasegawa PM An Atriplex nummularia cDNA with Sequence Relatedness to the Algal Caltractin Gene. Plant Physiol., 1992. 99(4): p. 1734-5 [PMID:16669106]