PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0175
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 674aa    MW: 73574.5 Da    PI: 7.4353
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0175genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-094675041954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Gh_D03G0175 467 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 504
                  664559******************************88 PP
2BELL93.22.4e-303443981872
         BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +Vd+rY++y+eq+qt+++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai++q+
  Gh_D03G0175 344 KVDRRYNHYCEQMQTIVNSFDLVMGYGAAIPYTALAQKAMSRHFRCLKDAISSQL 398
                  7***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.0E-65266396IPR006563POX domain
PfamPF075262.7E-39271395IPR006563POX domain
PROSITE profilePS5007112.455445508IPR001356Homeobox domain
SMARTSM003891.2E-9448512IPR001356Homeobox domain
CDDcd000868.63E-13448509No hitNo description
SuperFamilySSF466892.78E-17449515IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-29451514IPR009057Homeodomain-like
PfamPF059203.3E-18465504IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MASQGYHHHH HHHHHHQAAA GIFSFSNGFE RSAINHQEQQ QQLVQQIRRD KLRIQGFEPP  60
PPPLVGIEEE ESNALPVYEP TGMLSSEMFY FPSSVTVTAA STELLDQSLQ ANYRGQLGES  120
KNHRDSLAQQ QQLPSINADS AAAMHLFLMN PQTRSPSPPP PQPQPPPPGF HGGAFPPQFT  180
WVPDNSHEGG HGQGQGLSLS LSSLQHLEAA KLYYNQGGAA GGADGGGSSS ATATAQFQYK  240
HDHHSPHQPL GLVQNHQFHV GYNSSLGMVN VLRNSKYTKP AQELLEEFCS VGSGRFKKKK  300
LGKNNINPSS NPSNDGTTTN GSSSSTKDLP PFSASDRIEH QRRKVDRRYN HYCEQMQTIV  360
NSFDLVMGYG AAIPYTALAQ KAMSRHFRCL KDAISSQLKH SCELLGEKDG VGTSGITKGE  420
TPRLRMLEQS LRQQKAFHQI GMMEHEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK  480
HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQESKE GGDNNKGTRT NNNAAQTSTP  540
STTAVGGAGG SSPPPQPPEN DPSLIGTNTT QCFSENQLTN TGTSTTNTSI ATEVTPPVSD  600
SDIHQRLLAV TDDTCHRGSN TIVGTITAGN TDIGSTLIRF GTTGGDVSLT LGLRHAGNMP  660
DKASSFSVTD FGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16454512563Homeobox protein Meis2
3k2a_B2e-16454512563Homeobox protein Meis2
4xrm_A2e-16454512563Homeobox protein Meis2
4xrm_B2e-16454512563Homeobox protein Meis2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6225441e-142JX622544.1 Gossypium hirsutum clone NBRI_GE69320 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692336.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-151BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A1U8JPY60.0A0A1U8JPY6_GOSHI; BEL1-like homeodomain protein 4
STRINGGorai.003G018100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-134BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]