PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25914.8 Da PI: 10.0866 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.3 | 9.9e-29 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien +nrqvt+skRrng++KKA+EL vLCda+v++i+fsstgk++e+ Gh_D03G0105 9 KKIENATNRQVTYSKRRNGLFKKAQELTVLCDAKVSLIMFSSTGKFHEFL 58 68**********************************************96 PP | |||||||
2 | K-box | 91.4 | 1.6e-30 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yqk++g +l+++++e+++++++ Lk+ +++L+re+R+++G dL++L++keLq Le ++++sl iR++K++++++q+++ +kk ++l+e++ +L + l Gh_D03G0105 71 YQKTTGIDLWNSHYERMEENYRSLKEINKKLRREIRQRMGGDLNELNIKELQALEAKMDSSLLAIRERKYHVIKTQTDKHKKKVRNLEERHANLVMDL 168 89999*****************************************************************************************9887 PP K-box 99 e 99 e Gh_D03G0105 169 E 169 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.28E-36 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.54E-40 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 3.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.3E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.8E-20 | 82 | 165 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.924 | 84 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGRGKIEIKK IENATNRQVT YSKRRNGLFK KAQELTVLCD AKVSLIMFSS TGKFHEFLSP 60 NISTKGFFDL YQKTTGIDLW NSHYERMEEN YRSLKEINKK LRREIRQRMG GDLNELNIKE 120 LQALEAKMDS SLLAIRERKY HVIKTQTDKH KKKVRNLEER HANLVMDLEA KLDGQDGIVE 180 TGGYYESTMG LLPTGASNLY ALRLYQNQQP PLVLHHGTND LRLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-15 | 1 | 62 | 1 | 62 | MEF2C |
5f28_B | 2e-15 | 1 | 62 | 1 | 62 | MEF2C |
5f28_C | 2e-15 | 1 | 62 | 1 | 62 | MEF2C |
5f28_D | 2e-15 | 1 | 62 | 1 | 62 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22166 | 0.0 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC155646 | 0.0 | KC155646.1 Gossypium hirsutum MADS box protein MADS51 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313945.1 | 1e-165 | floral homeotic protein PMADS 1-like | ||||
Swissprot | Q003J2 | 1e-105 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | A0A2P5R5A2 | 1e-165 | A0A2P5R5A2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G011500.1 | 1e-161 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5261 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 2e-72 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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