PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D03G0017 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Nin-like | ||||||||
Protein Properties | Length: 336aa MW: 38768.9 Da PI: 10.0196 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.7 | 3.1e-25 | 203 | 252 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi +A+++L+v+l vLKr+CR++GI+RWPhRkiksl Gh_D03G0017 203 ARIALEDLAKYFDLPIVEASRNLNVGLIVLKRKCREFGIPRWPHRKIKSL 252 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.553 | 187 | 272 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-20 | 205 | 252 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MDLSQGPCLT TLVVFENTIN KELIRSLHVY RLENGEENEV EREFVFRKDG PYVETAAAPL 60 LLLQGVPAHE LFEGRVIGLW LCSFAFHAHR LPRFFFIPSL LSISRNPKLK SIPTLANDLQ 120 LIFQRGCGTE DRRPSRELSK ETCTRDGDNH YHLKRSLLVL DQDLNCLPNS GANSELLKSR 180 QTEQNATGVA VKKKKRADSK DVARIALEDL AKYFDLPIVE ASRNLNVGLI VLKRKCREFG 240 IPRWPHRKIK SLDGLIRDLL SLSLLLKRLK TQIMQEEAEQ RQQDEAAAYA VAKRRMMLET 300 EKESIEKEPF IELKSETKRF RQDIFKRRHK ARALKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016726260.1 | 0.0 | PREDICTED: protein RKD5 | ||||
Swissprot | O81791 | 1e-93 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | A0A1U8MHI9 | 0.0 | A0A1U8MHI9_GOSHI; protein RKD5 | ||||
STRING | Gorai.003G002500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 8e-77 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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