PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0017
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 336aa    MW: 38768.9 Da    PI: 10.0196
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0017genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK79.73.1e-25203252352
       RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ++i ledl+kyF+lpi +A+++L+v+l vLKr+CR++GI+RWPhRkiksl
  Gh_D03G0017 203 ARIALEDLAKYFDLPIVEASRNLNVGLIVLKRKCREFGIPRWPHRKIKSL 252
                  6899********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.553187272IPR003035RWP-RK domain
PfamPF020421.6E-20205252IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDLSQGPCLT TLVVFENTIN KELIRSLHVY RLENGEENEV EREFVFRKDG PYVETAAAPL  60
LLLQGVPAHE LFEGRVIGLW LCSFAFHAHR LPRFFFIPSL LSISRNPKLK SIPTLANDLQ  120
LIFQRGCGTE DRRPSRELSK ETCTRDGDNH YHLKRSLLVL DQDLNCLPNS GANSELLKSR  180
QTEQNATGVA VKKKKRADSK DVARIALEDL AKYFDLPIVE ASRNLNVGLI VLKRKCREFG  240
IPRWPHRKIK SLDGLIRDLL SLSLLLKRLK TQIMQEEAEQ RQQDEAAAYA VAKRRMMLET  300
EKESIEKEPF IELKSETKRF RQDIFKRRHK ARALKN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016726260.10.0PREDICTED: protein RKD5
SwissprotO817911e-93RKD5_ARATH; Protein RKD5
TrEMBLA0A1U8MHI90.0A0A1U8MHI9_GOSHI; protein RKD5
STRINGGorai.003G002500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120492429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.18e-77RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]