PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G2436

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 309aa MW: 34254.4 Da PI: 10.1133

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G2436	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.4	5.8e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI + R+ ++k++w++ Gh_D02G2436 5 KQKWTPEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55 79*********************************88*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.213	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	3.59E-15	2	65	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-13	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.6E-8	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	4.83E-18	6	56	No hit	No description
Gene3D	G3DSA:1.10.10.10	1.9E-14	117	188	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	2.8E-13	118	183	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	2.07E-16	118	197	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	23.749	120	188	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	2.7E-7	125	181	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MGAPKQKWTP EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA 60 NGWGSRDKAR LAVKRTSSFP KQEESAVDLA VAPSDEEIVD VKSVPVSSAT LQIPSAAKRS 120 IVRLDNLIME AITTLKEPGG SNKTNIAAYI EEQYWAPPDF KRLLSAKLKY LTACGRLIKV 180 KRRYRIAPAL SFSDRRRNHP MLFSEGRERV SPRFDRDDLK IITKSQIDLE LARMRKMTPQ 240 EAAAAAARAV AEAEAAIAEA EEAAREAEVA EADAEAAQAF AEAAMKTLKG RNNQKVVNCH 300 VLSLFILHT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2779	0.0	boll\| ovule\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017646167.1	0.0	PREDICTED: telomere repeat-binding factor 1
Swissprot	Q8VWK4	1e-106	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A0D2SM51	0.0	A0A0D2SM51_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5WMX0	0.0	A0A2P5WMX0_GOSBA; Uncharacterized protein
STRING	Gorai.005G230800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8722	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	1e-106	telomere repeat binding factor 1

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]