PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G2404 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 221aa MW: 25407.2 Da PI: 8.3936 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.3 | 9.6e-27 | 56 | 144 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka++++k +k+gkw++t++++eHnH+l+ Gh_D02G2404 56 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGPVRKPRPSTREGCKAMIHIKFNKSGKWVITRFVKEHNHPLV 144 9**************************************99999998****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-24 | 56 | 144 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MNNVPCLCVA VDLDEGAEAI ESFTGGEILA FPCEADSIVE PHEGMEFESE DAAKIFYDEY 60 ARRVGFVMRV MSCRRSERDG RILARRLGCN KEGYCVSIRG KFGPVRKPRP STREGCKAMI 120 HIKFNKSGKW VITRFVKEHN HPLVVAPREA RQTMDEKDKK IQELTVELRN KKRLCAAYQE 180 QLTAFMKIVE EHSNQLSKKV QNVVNNLKEY ESIEPQLLQQ R |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23408 | 1e-171 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016691045.1 | 1e-164 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2P5PVG5 | 1e-163 | A0A2P5PVG5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G128700.1 | 1e-155 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-115 | FAR1 family protein |