PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2171
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 611aa    MW: 67336.9 Da    PI: 7.0123
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2171genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.41.2e-083563882254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  + yp+ +e+  LA+++gLt +qV++WF N R +
  Gh_D02G2171 356 TCYPKDSEKIMLARQTGLTRSQVSNWFINARVR 388
                  67*****************************88 PP
2BELL126.97.4e-41252323172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag+g+akpYt++A+++iSrhFrcLkd i +qi
  Gh_D02G2171 252 ERQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGCGAAKPYTAVAQQTISRHFRCLKDTINGQI 323
                  79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-59181321IPR006563POX domain
PfamPF075261.3E-49187319IPR006563POX domain
SMARTSM003894.6E-6330396IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-18356398IPR009057Homeodomain-like
SuperFamilySSF466894.71E-12356399IPR009057Homeodomain-like
PfamPF059202.3E-12358388IPR008422Homeobox KN domain
PROSITE profilePS5007110.787358392IPR001356Homeobox domain
CDDcd000861.79E-9358393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MLLVPRDTVP MIYMRESMPG SYAESPVLQG NTMMYMNSGS YSDAFAGNSQ QQNNCIGMQG  60
VEASDSTSQQ HGIMSNLGGS HVVEHDFGAW RDARASFTMG PQGLSLRLGT QIPFGIQMPS  120
IPFWNPDSDL ASFLSHNPSL TGGRNGSSRD EQPRNAGYLP HGFSGANQGT NKGDLYACGM  180
SSMSRAIPNS KYLKAAQQLL DEVVNVPKAL KQIDGEKNRM KSCKEGDERS KNVLSNQQES  240
SNNIQKELSH AERQELQSKL TKLLSMLDEV DRRYKQYYHQ MQIVVSSFDA IAGCGAAKPY  300
TAVAQQTISR HFRCLKDTIN GQIQATRYFR RRLRSTDYLS ALRGATAKAT KSSAATCYPK  360
DSEKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EFADLEMDSH SSSENAVKAR  420
KGNTRTSEDI GEDQQQSGSS SATERCSAGQ LVDSKSNHVP DVDIAGTITT TVFQNVTHRE  480
AETEYGLLRL SEVQRPNVDN SNLFLDGITH SDGVGDRFMK ATTTSYHVSE LGRFGNASGV  540
SLTLGLQHCE DGSIPMSGVG HQNFVAMTRD NDIYNPAASS IGPETTDSEY VTPGNRQHRF  600
NSSHLLHDFV A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.247940.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691570.10.0PREDICTED: LOW QUALITY PROTEIN: BEL1-like homeodomain protein 7
TrEMBLA0A1U8JMR60.0A0A1U8JMR6_GOSHI; LOW QUALITY PROTEIN: BEL1-like homeodomain protein 7
STRINGGorai.005G246400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-106BEL1-like homeodomain 6