PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G2124

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 370aa MW: 41356.7 Da PI: 8.7563

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G2124	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.3	1.4e-07	237	283	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+a+ ++ ele l+++ l +e+ Gh_D02G2124 237 AQRSRVRKLQYIAELERNVQALQAKGSEVSAELEFLNQQNLILSMEN 283 89***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0032	226	285	IPR004827	Basic-leucine zipper domain
CDD	cd14703	4.07E-15	230	276	No hit	No description
SuperFamily	SSF57959	1.76E-5	237	279	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-6	237	280	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MANSKGSTNI RNFMVSGKHA LLPPKSPFPT VSPAYTDYVP NSVIGSKAVQ KPREGNTHHQ 60 CTSSESLRME EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDASNAPN LDYAAQDEFR 120 YQNMINTPSW ASQDARLSSL YSDVNLVKQN RAWDSSLNVM THPSRLPSLR ENTFLQSLGS 180 SCAPRELEGA LSTASEKQDS AESAPPDAKA SSEKKDNSHT KSSTCDGDSK RAKQQFAQRS 240 RVRKLQYIAE LERNVQALQA KGSEVSAELE FLNQQNLILS MENKALKQRL EGLAQEKAIK 300 HFEQEVLERE LSRLRALYQQ QQNQPQQQQQ LSSTHRRSSS RDLDSQFANL SLNHKDANSG 360 STPVTGPLRI

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MANSKGSTNI RNFMVSGKHA LLPPKSPFPT VSPAYTDYVP NSVIGSKAVQ KPREGNTHHQ  60
CTSSESLRME EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDASNAPN LDYAAQDEFR  120
YQNMINTPSW ASQDARLSSL YSDVNLVKQN RAWDSSLNVM THPSRLPSLR ENTFLQSLGS  180
SCAPRELEGA LSTASEKQDS AESAPPDAKA SSEKKDNSHT KSSTCDGDSK RAKQQFAQRS  240
RVRKLQYIAE LERNVQALQA KGSEVSAELE FLNQQNLILS MENKALKQRL EGLAQEKAIK  300
HFEQEVLERE LSRLRALYQQ QQNQPQQQQQ LSSTHRRSSS RDLDSQFANL SLNHKDANSG  360
STPVTGPLRI

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.17164	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691515.1	0.0	PREDICTED: uncharacterized protein At4g06598-like
Swissprot	Q8W3M7	1e-73	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	A0A1U8JMK8	0.0	A0A1U8JMK8_GOSHI; uncharacterized protein At4g06598-like
STRING	Gorai.005G241600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	4e-95	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]