PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G2047

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-PHD

Protein Properties

Length: 939aa MW: 103424 Da PI: 4.7538

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G2047	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.9	2.6e-11	866	909	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++ ++L e F++n+yp+++++e+L k l++t rqV+ WF N R Gh_D02G2047 866 ETEKQRLCESFRENQYPDRATKERLGKDLDMTFRQVSKWFENAR 909 567899************************************99 PP
2	PHD	39.2	1.6e-13	502	556	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ Cg+ ++++++lCdg C++ fH++Cl+++l +e++p g wlC+ C + Gh_D02G2047 502 FCAKCGSkdLSANNDIILCDGvCDRGFHQYCLQPPLLKEDIPPGdeGWLCPGCYC 556 699*977677****77****************9999*****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	9.97E-15	492	560	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	2.3E-13	499	555	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.941	500	557	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	9.1E-10	502	555	IPR001965	Zinc finger, PHD-type
CDD	cd15504	2.04E-26	502	554	No hit	No description
Pfam	PF00628	3.8E-11	502	556	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	503	554	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	4.8E-12	844	909	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.726	855	915	IPR001356	Homeobox domain
SMART	SM00389	2.1E-6	858	919	IPR001356	Homeobox domain
CDD	cd00086	3.29E-9	862	909	No hit	No description
SuperFamily	SSF46689	5.13E-10	865	912	IPR009057	Homeodomain-like
Pfam	PF00046	8.1E-9	866	909	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 939 aa Download sequence Send to blast
MLIFFIASFL PDMINVEHMG VSPPETKSEK GNHFAPEETT AEQAHELGSE YLHTELSKNK 60 HPCGYAITRN ESAETATGVS FSDIHESSSG YVDKKSPPEH LGLLPKYASE HNPPDNSFCH 120 QETVSGMTHE YGSGYVHETS EKKHQPGSDI VQNNLEEACT LVCGLPAEHL RPCSEDFSKN 180 ARTESLRVLP EDSSKCTQID QLSCPQLGSV EPTAAFGSIN TCKELGEPTE QQQQLGSESL 240 SNGIGKSPTA TSSNAFYQAL ELYPEVMNQS NCGERFQSPS EGASIVSQTG KSYLVDPLGL 300 PPGFESGNSC VQQPRLHSED MAQSSGVEQH EATPKNLLEN SVRGRDGESS KTRKKYTPRP 360 LTSSDRVLRS KSQEKSKASE LSNNITDIGS SEQQKGRNRN KMIEKREVSD EYSRIRSHLR 420 YLVNRINYER SLIAAYSTEG WKGLSLEKLK PEKELQRATS EILRRKLKIR DLFQRIDSLC 480 AEGRLPESLF DSKGEIDSED IFCAKCGSKD LSANNDIILC DGVCDRGFHQ YCLQPPLLKE 540 DIPPGDEGWL CPGCYCKLFC IELVNESQGT SFCLADSWEK VFPEAVVAAG GQNQDPNLEL 600 PSDDSDDSDY NAENSEPDEK DQGDESSSDE SDFTCSSEEL EVPRNVDPCL GLLSDDSEDD 660 NYDPDGPDHD NVAEPESSTS DFTSDSEDLG AMLKDNSSSP KDGPVSNIGS TDSKGQKPKL 720 GGNESRSDKP SSIMDSASGQ DGTAVSKKRS SEKLDYKKLY DETYVNFPSS SSDDEDWSDT 780 IAPRKRKRHA AGASSAPENG NASSSRSVSI SEGSKLNPEH KLRRNMRQNS NFKDTNLSPA 840 ESKGGTSVSG SSGKKAGSST HRRLVETEKQ RLCESFRENQ YPDRATKERL GKDLDMTFRQ 900 VSKWFENARW SFNHPTSNQE TTAKRVAENA ITSVVPKKN

Sequence ? help Back to Top

Protein Sequence Length: 939 aa Download sequence Send to blast

MLIFFIASFL PDMINVEHMG VSPPETKSEK GNHFAPEETT AEQAHELGSE YLHTELSKNK  60
HPCGYAITRN ESAETATGVS FSDIHESSSG YVDKKSPPEH LGLLPKYASE HNPPDNSFCH  120
QETVSGMTHE YGSGYVHETS EKKHQPGSDI VQNNLEEACT LVCGLPAEHL RPCSEDFSKN  180
ARTESLRVLP EDSSKCTQID QLSCPQLGSV EPTAAFGSIN TCKELGEPTE QQQQLGSESL  240
SNGIGKSPTA TSSNAFYQAL ELYPEVMNQS NCGERFQSPS EGASIVSQTG KSYLVDPLGL  300
PPGFESGNSC VQQPRLHSED MAQSSGVEQH EATPKNLLEN SVRGRDGESS KTRKKYTPRP  360
LTSSDRVLRS KSQEKSKASE LSNNITDIGS SEQQKGRNRN KMIEKREVSD EYSRIRSHLR  420
YLVNRINYER SLIAAYSTEG WKGLSLEKLK PEKELQRATS EILRRKLKIR DLFQRIDSLC  480
AEGRLPESLF DSKGEIDSED IFCAKCGSKD LSANNDIILC DGVCDRGFHQ YCLQPPLLKE  540
DIPPGDEGWL CPGCYCKLFC IELVNESQGT SFCLADSWEK VFPEAVVAAG GQNQDPNLEL  600
PSDDSDDSDY NAENSEPDEK DQGDESSSDE SDFTCSSEEL EVPRNVDPCL GLLSDDSEDD  660
NYDPDGPDHD NVAEPESSTS DFTSDSEDLG AMLKDNSSSP KDGPVSNIGS TDSKGQKPKL  720
GGNESRSDKP SSIMDSASGQ DGTAVSKKRS SEKLDYKKLY DETYVNFPSS SSDDEDWSDT  780
IAPRKRKRHA AGASSAPENG NASSSRSVSI SEGSKLNPEH KLRRNMRQNS NFKDTNLSPA  840
ESKGGTSVSG SSGKKAGSST HRRLVETEKQ RLCESFRENQ YPDRATKERL GKDLDMTFRQ  900
VSKWFENARW SFNHPTSNQE TTAKRVAENA ITSVVPKKN

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.15156	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691640.1	0.0	PREDICTED: homeobox protein HAT3.1-like
TrEMBL	A0A2P5S2K7	0.0	A0A2P5S2K7_GOSBA; Uncharacterized protein
STRING	Gorai.005G234300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7270	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	8e-91	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain