PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G2008
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 409aa    MW: 46491.7 Da    PI: 9.5726
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G2008genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044372391120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C++C+ ++ r+++L++H+
  Gh_D02G2008 372 FRCTICNITCGRSEDLNSHL 391
                  89*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031341.5E-2135108IPR004345TB2/DP1/HVA22-related protein
SuperFamilySSF576671.64E-10211254No hitNo description
SMARTSM004513.8E-4221255IPR003604Zinc finger, U1-type
PfamPF128749.1E-10224248No hitNo description
SMARTSM003550.27224248IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.54E-8360400No hitNo description
SMARTSM004510.0038369403IPR003604Zinc finger, U1-type
PfamPF128742.4E-4372396No hitNo description
SMARTSM003555.5372396IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280374396IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGFQALVKLA LICFHSLAWY FFLNFLNLQD FFLRASIQAI EANSNTDTKK LVTYWIIFSL  60
ISLFEHAFMG ILQWLPFWPY MKLTIVCWMM IPHFDGAFYV YNHFVHPCLY MDLPTIINWF  120
KKQQDLFLKD NFLVEVADDC VKAHGPTEVQ EKLIANEGTE TSILQKGIKP VQIAEKSEVA  180
PIRKTDPNVI QTVNNTTVTL SETMGEVGPD LPKISSDKQV QKEWTCAMCQ VTTTSEKTLK  240
SHLRGRKHKN KLMQANNQPC KGKAGLASKV KQSEVSRREP QKQSEVSRKE PQKKGSKNYE  300
PPKGQMSASS AACSNAVNPK TEMSKSNLPK EEWKKVIPTT NMVGNHVKSS ENVQGQQQQV  360
EKEHDKTKIP QFRCTICNIT CGRSEDLNSH LWGRKHLAKL NSLGRGQLA
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO722792131e-151
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691709.10.0PREDICTED: uncharacterized protein LOC107908921 isoform X1
TrEMBLA0A1U8JTV00.0A0A1U8JTV0_GOSHI; uncharacterized protein LOC107908921 isoform X1
STRINGGorai.005G226700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2060334