PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1984

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 299aa MW: 32513.1 Da PI: 9.3896

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1984	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.9	1.7e-08	111	132	1	22
--S---SGGGGTS--TTTTT-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCk 22 yk e+Cr + ++G+C+yG++C+ Gh_D02G1984 111 YKSEICRAWEEFGHCRYGSKCQ 132 99*******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.737	110	132	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.42E-5	110	132	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-7	110	132	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-5	111	132	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MDSFYNENNK LNVLKNSNIP KLMTPARSRG SYYSSPENLI KYLRSNSLSS CGNSSSSGKS 60 SFRSSVSPQS EKTPLKVVEK DVLVMDEVLV ASDSNIVGSG SSSSSGSVGY YKSEICRAWE 120 EFGHCRYGSK CQAQYKTYGS TVSNAYSSKP RLLHPVTETA AFITQKDSFA NPGYTGPSFS 180 TTIKPEETII NSLSTVQPEI TRLNTNFTMK RNTKTSKINP TSTSTSTSTS TSTIRPDTSA 240 TTFTNGSNWS PQDDRIDVTL PSFPGQTPSK GNIDAYIDNV LHAPATKKRL PVFSAICPE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479955.1	1e-177	PREDICTED: tristetraprolin-like isoform X1
Refseq	XP_012479956.1	1e-177	PREDICTED: tristetraprolin-like isoform X2
TrEMBL	A0A0D2PXG4	1e-175	A0A0D2PXG4_GOSRA; Uncharacterized protein
STRING	Gorai.005G217800.1	1e-176	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15770	8	15