PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1937
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 31165.5 Da    PI: 8.2688
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1937genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-111154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tlk++k+++
      Gh_D02G1937 11 EWSREQDKAFENALATYPEDsldRWEKIAADVP-GKTLKEIKEHY 54
                     7********************************.**********9 PP
2Myb_DNA-binding43.95.7e-14122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      Gh_D02G1937 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-6555IPR009057Homeodomain-like
PROSITE profilePS512938.429762IPR017884SANT domain
SMARTSM007171.1E-9860IPR001005SANT/Myb domain
SuperFamilySSF466896.24E-111063IPR009057Homeodomain-like
PfamPF002498.0E-91054IPR001005SANT/Myb domain
CDDcd001671.07E-91157No hitNo description
PROSITE profilePS5129417.61114171IPR017930Myb domain
SuperFamilySSF466897.9E-17117172IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17119169IPR006447Myb domain, plants
SMARTSM007174.5E-11119169IPR001005SANT/Myb domain
PfamPF002497.1E-12122166IPR001005SANT/Myb domain
CDDcd001671.21E-10122167No hitNo description
Gene3DG3DSA:1.10.10.605.0E-11122165IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTVEEAVNTS EWSREQDKAF ENALATYPED SLDRWEKIAA DVPGKTLKEI KEHYELLEDD  60
VNRIVSGCVP LPPYNSFEGS TGHAGDEGTG KKGSSHLGHC NNDSNHGSKN SRSDQERRKG  120
IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVGN GDIASQGPIT GQSNGAAAGG SSAKSAKQTS RHPASPPGVG MYGAPTIGQP  240
IGGPLVSAVG RPVNLPASAH MGYGVTVPGA PMNMGPATYP MPHSTAHSHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1512761175RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.260620.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016691860.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016691861.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016691862.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-123SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A1U8JNM00.0A0A1U8JNM0_GOSHI; transcription factor DIVARICATA-like
STRINGGorai.005G212900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-118MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]