PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1904
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 419aa    MW: 47573.4 Da    PI: 9.6392
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1904genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29e-06730126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 +kt+lC  ++r G+C++  +C+FaHg
  Gh_D02G1904  7 FKTKLCVLYQR-GHCSR-QSCSFAHG 30
                 69*********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.0E-8535IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.455632IPR000571Zinc finger, CCCH-type
SMARTSM003560.0082631IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MVERKLFKTK LCVLYQRGHC SRQSCSFAHG DADLRGFSGS YGGKRNFRDG DLRDKLDRRL  60
SPKRRYSPAR YVRDQQISQR YSPLRSIDKK RNRKKKECLD GQSDFPETLK IPNVMEDLVI  120
EGRNTSSTSK SILEDQLKEV RVDIDMLINR KHELETFVEE KVQEAETLTS QIEELDSQLE  180
REKEQCKKIT SRIKKFVKAH NRCSQIEDEL RRSQARLQKS GEQLVLHISG TSGDEENSNV  240
NIVSDGETNH LHTSYPHKVS RGNSSPSKKR LWTNKDTTEG PICEGKALQA ETVRLGKRSR  300
WSERPSQSNI DKENGSLKNG NSSAVPLASN EKPRKGKKVS VRTSTTDKLK GARSSLSLPL  360
TSMAAHAVDD VEILEVEEEK VEASALPFLL PPPPPIRQNG YSQYEGNDRN VDVDRVDVI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016666491.10.0PREDICTED: zinc finger CCCH domain-containing protein 40-like
TrEMBLA0A1U8HKB10.0A0A1U8HKB1_GOSHI; zinc finger CCCH domain-containing protein 40-like
STRINGGorai.005G209600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100692127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.15e-53C3H family protein