PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G1879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 29336.8 Da PI: 6.7833 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +v+++G +W+ ++ g+ R++k+c++rw +yl Gh_D02G1879 14 KGTWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLARCGKSCRLRWMNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+e +++++ lG++ W++Ia+ ++ gRt++++k++w++ Gh_D02G1879 67 RGSYSKEEEETIIRLHDSLGNR-WSAIAAQLP-GRTDNEVKNHWHTT 111 7999******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.994 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.47E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-8 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.578 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.75E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVRTPCCDKT GLRKGTWTPE EDRKLMAYVT RYGCWNWRQL PKFAGLARCG KSCRLRWMNY 60 LRPNIKRGSY SKEEEETIIR LHDSLGNRWS AIAAQLPGRT DNEVKNHWHT TLKKRFKHKP 120 SAAAKDGKDN SSQDPKLRRG TSREKEETKL NDVDHLLISS PNPPLILESS LSSQQPASSD 180 QNSSNTNTDI HTDTLLEAYE AESSNFWTEP FLSDINYMWS DVSSVVPYEA DQFPLLDGEI 240 LYPFDFYDQV QGLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016692279.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1U8JVI8 | 0.0 | A0A1U8JVI8_GOSHI; myb-related protein Myb4-like | ||||
STRING | Gorai.005G206800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-59 | myb domain protein 15 |