PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1753
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 309aa    MW: 34353.4 Da    PI: 7.1686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1753genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.4e-15219243226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+ +++tG C+yGd C+FaH+
  Gh_D02G1753 219 KTELCNKWQETGACPYGDHCQFAHS 243
                  9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-18212250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-11214249IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8217244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535217245IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-12219243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-11251284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-8252282IPR000571Zinc finger, CCCH-type
SMARTSM003560.001255282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159255283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MQNDNVSTAY GDLAAGKLNH YQNGGVYSSS TANSSASLLA LHHPRLLMQQ HQDMINRHSL  60
CLSRFREAAK EAESLRQENT SLRSVNSDLN KQLNALFQAS VQDHFASSDY NTTPFDLVNA  120
LEELCFGGGG GVGEGEVSDM EGEVDVERVK LPKSISIRSN GYQKMMSKAG AASHRGKTRG  180
LARTSNASQQ IGRAKVYVQG GKEEEELLEL EVYNQGMLKT ELCNKWQETG ACPYGDHCQF  240
AHSVEELRPV IRHPRYKTEV CRMVLTGYVC SYGHRCHFRH ALTEQEKSIG HLNPQTSMST  300
CGYRDVWCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-19219284570Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016692620.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
RefseqXP_016722051.10.0PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-78C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A1U8M5F80.0A0A1U8M5F8_GOSHI; zinc finger CCCH domain-containing protein 15-like
STRINGGorai.005G193700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72872339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.24e-76C3H family protein