PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D02G1526 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 143aa MW: 16112.5 Da PI: 10.4331 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 46.1 | 1.1e-14 | 11 | 91 | 18 | 97 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + e+P ar+kki+k d+d++++ +ea l+s + +lf+ l+ r+ a e+k++t+k + +a++r + dfl+d p Gh_D02G1526 11 RPEFPTARVKKIMKLDKDINKVNSEALFLVSCSTNLFLRFLAERTAQVAAEKKKKTVKLDHLRTAIKRHRpTSDFLLDSLP 91 5689**************************************************************9975389*****987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.4E-18 | 13 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 5.87E-17 | 13 | 96 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.0E-20 | 14 | 91 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
MAEDEAVDPI RPEFPTARVK KIMKLDKDIN KVNSEALFLV SCSTNLFLRF LAERTAQVAA 60 EKKKKTVKLD HLRTAIKRHR PTSDFLLDSL PIPAESTQSV ARSATDRDRS RPVADKSAPA 120 GTRRIDLFFR KPENEAPIQI NDA |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012479157.1 | 2e-98 | PREDICTED: DNA polymerase epsilon subunit C | ||||
Refseq | XP_016693009.1 | 2e-98 | PREDICTED: DNA polymerase epsilon subunit C-like | ||||
TrEMBL | A0A0D2PU79 | 4e-97 | A0A0D2PU79_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JXK1 | 4e-97 | A0A1U8JXK1_GOSHI; DNA polymerase epsilon subunit C-like | ||||
TrEMBL | A0A2P5SJG3 | 4e-97 | A0A2P5SJG3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G168300.1 | 7e-98 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12860 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43250.1 | 1e-50 | nuclear factor Y, subunit C13 |