PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1526
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 143aa    MW: 16112.5 Da    PI: 10.4331
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1526genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.11.1e-1411911897
        NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                 + e+P ar+kki+k d+d++++ +ea  l+s + +lf+  l+ r+   a e+k++t+k   + +a++r   + dfl+d  p
  Gh_D02G1526 11 RPEFPTARVKKIMKLDKDINKVNSEALFLVSCSTNLFLRFLAERTAQVAAEKKKKTVKLDHLRTAIKRHRpTSDFLLDSLP 91
                 5689**************************************************************9975389*****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008081.4E-181376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.87E-171396IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.0E-201491IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAEDEAVDPI RPEFPTARVK KIMKLDKDIN KVNSEALFLV SCSTNLFLRF LAERTAQVAA  60
EKKKKTVKLD HLRTAIKRHR PTSDFLLDSL PIPAESTQSV ARSATDRDRS RPVADKSAPA  120
GTRRIDLFFR KPENEAPIQI NDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479157.12e-98PREDICTED: DNA polymerase epsilon subunit C
RefseqXP_016693009.12e-98PREDICTED: DNA polymerase epsilon subunit C-like
TrEMBLA0A0D2PU794e-97A0A0D2PU79_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JXK14e-97A0A1U8JXK1_GOSHI; DNA polymerase epsilon subunit C-like
TrEMBLA0A2P5SJG34e-97A0A2P5SJG3_GOSBA; Uncharacterized protein
STRINGGorai.005G168300.17e-98(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-50nuclear factor Y, subunit C13