PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1515

Common Name

SPL20

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 474aa MW: 52187.2 Da PI: 7.9469

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1515	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.7	1.2e-41	182	259	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v+v gle rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ Gh_D02G1515 182 RCQVEGCNLDLSSAKDYHRKHRVCESHSKSPKVIVGGLELRFCQQCSRFHALSEFDEKKRSCRRRLSDHNARRRKPQT 259 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.1E-33	176	244	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.599	180	257	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.08E-39	181	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-32	183	256	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MDWNAKTPLQ WEWENLMMLN ATPTEIPRKL RSAEWDIEGE EELDSGSLYS SGAAAGGSGG 60 SGSDLGLISL SKSSKSASIN SSSAGEVKVT TFTLEAFEAI PHEISNKKKV SKVEHTGSSP 120 IFEASVGSGE PLLSLKLGKQ TYFEDVCTGS NSKTSSYSAT PGPSPSPAKR SKPNCQTKHI 180 LRCQVEGCNL DLSSAKDYHR KHRVCESHSK SPKVIVGGLE LRFCQQCSRF HALSEFDEKK 240 RSCRRRLSDH NARRRKPQTD AIHFSAARPS PAAYDGKQLM SFVWNKVPFL HNARPNENFT 300 WEGTFVSKSS ETKGYAPTKA GNANGQLQLP GNQLLNSMTS RCYDSNRFLP VKGKQNTVEV 360 LNQGVEESTV ASNMGTTQDL HRALSLLSNE SSVSCEPKQH GSLAYPVHVS GSSMSQPTMN 420 VISQSFPIPY ALSENWQMEQ EQTTQSQVEG DNHLQEFQIL KVPYDNSFYS NQMN

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MDWNAKTPLQ WEWENLMMLN ATPTEIPRKL RSAEWDIEGE EELDSGSLYS SGAAAGGSGG  60
SGSDLGLISL SKSSKSASIN SSSAGEVKVT TFTLEAFEAI PHEISNKKKV SKVEHTGSSP  120
IFEASVGSGE PLLSLKLGKQ TYFEDVCTGS NSKTSSYSAT PGPSPSPAKR SKPNCQTKHI  180
LRCQVEGCNL DLSSAKDYHR KHRVCESHSK SPKVIVGGLE LRFCQQCSRF HALSEFDEKK  240
RSCRRRLSDH NARRRKPQTD AIHFSAARPS PAAYDGKQLM SFVWNKVPFL HNARPNENFT  300
WEGTFVSKSS ETKGYAPTKA GNANGQLQLP GNQLLNSMTS RCYDSNRFLP VKGKQNTVEV  360
LNQGVEESTV ASNMGTTQDL HRALSLLSNE SSVSCEPKQH GSLAYPVHVS GSSMSQPTMN  420
VISQSFPIPY ALSENWQMEQ EQTTQSQVEG DNHLQEFQIL KVPYDNSFYS NQMN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-27	183	256	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	255	KKRSCRRRLSDHNARRRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622328	0.0	KJ622328.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL20) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016693037.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_016693038.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_016693039.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_016693040.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
Refseq	XP_016693041.1	0.0	PREDICTED: squamosa promoter-binding-like protein 2
TrEMBL	A0A1U8JRY6	0.0	A0A1U8JRY6_GOSHI; squamosa promoter-binding-like protein 2
STRING	Gorai.005G166500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6562	26	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	7e-79	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Zhang X, et al. Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum. Mol. Genet. Genomics, 2015. 290(1): p. 115-26 [PMID:25159110]