PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1321
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 526aa    MW: 56443 Da    PI: 6.2071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1321genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09367415355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Gh_D02G1321 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17362433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-11362419No hitNo description
PROSITE profilePS5088815.485364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDIGEKDKYE LGKRDEHNNI NYQAPVLSSD WQFGGANLTS AGMSLVPTTN PLAIGSSCAS  60
ASLVDSFGSS LWEHPSNSPN MGFCDFSVQN GANSSNAMEI GKGLPNSLRS SIDRPFDMGW  120
NAASAMLKGG IFLPNTTGIL AQSLSQLPAD SAFIERAARF SSFNGGNFSD MVNPFGVPEP  180
MGLYARGVGL MQGPDDIFAV NGMKSVSVME SQKSKLDATE ATRDAGLRVE NRAKASPLEN  240
ERKSESHMQP NEEAKQGTGG SGNESDEAEI SSRDGGQDEP SALDGTGGEP SAKGLSSKKR  300
KKSLQDAEID RAKGGQTSTK TAKDSPENQQ KQSMMINKTT GKQGSPASHP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDFSIEALL AKDIIQSRAG PSSTLGFSPD LSMGYPPLHP SQPGLVQAPL  480
PVIGNSSDVI HKALSSQLTS MTGGLKEPNQ HSNAWEDELH NVVQMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.206811e-122boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468111e-99EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724756.10.0PREDICTED: transcription factor bHLH49-like isoform X2
RefseqXP_016724762.10.0PREDICTED: transcription factor bHLH49-like isoform X2
TrEMBLA0A2P5RP090.0A0A2P5RP09_GOSBA; Uncharacterized protein
STRINGGorai.005G148300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-123bHLH family protein