PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1311
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25649.6 Da    PI: 9.8458
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1311genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.26.7e-31959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskRr g++KKA+ELSvLCdaeva+i+fs++ klyeys+
  Gh_D02G1311  9 KRIENKINRQVTFSKRRSGLFKKAHELSVLCDAEVALIVFSHKWKLYEYST 59
                 79***********************************************96 PP
2K-box83.54.5e-2810817335100
        K-box  35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +Rh++GedL++LslkeLq+LeqqL++++k+iR++Kn+ll e+i+elq+kek+++e+n +L ++++e
  Gh_D02G1311 108 LRHYMGEDLDPLSLKELQNLEQQLDTAVKHIRARKNQLLNESISELQRKEKAIKEQNAMLANQIKE 173
                  6**************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.268161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.16E-40273No hitNo description
SuperFamilySSF554552.62E-34288IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.86987177IPR002487Transcription factor, K-box
PfamPF014861.0E-21108171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRSGLFK KAHELSVLCD AEVALIVFSH KWKLYEYSTD  60
SCMEKILERY ERHYYAERHL VATEPESQVD LFSLVLSYVI SLISFLRLRH YMGEDLDPLS  120
LKELQNLEQQ LDTAVKHIRA RKNQLLNESI SELQRKEKAI KEQNAMLANQ IKEREKTVAR  180
QSQWGLQDNG LNTSSFVLPH PHPSLNIGLI SHVLGIRSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-20179176MEF2C
5f28_B9e-20179176MEF2C
5f28_C9e-20179176MEF2C
5f28_D9e-20179176MEF2C
6byy_A7e-20179176MEF2 CHIMERA
6byy_B7e-20179176MEF2 CHIMERA
6byy_C7e-20179176MEF2 CHIMERA
6byy_D7e-20179176MEF2 CHIMERA
6bz1_A7e-20179176MEF2 CHIMERA
6bz1_B7e-20179176MEF2 CHIMERA
6bz1_C7e-20179176MEF2 CHIMERA
6bz1_D7e-20179176MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.210806e-69boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556391e-167KC155639.1 Gossypium hirsutum MADS box protein MADS44 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314328.11e-134truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-104AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2P5RNK41e-138A0A2P5RNK4_GOSBA; Uncharacterized protein
STRINGGorai.005G147200.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.18e-85MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]