PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1266
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 444aa    MW: 49886.5 Da    PI: 8.0262
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1266genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-11121178147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++             +R  k+c++rw++ 
      Gh_D02G1266 121 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLEgrsgkivaknsGKRKSKSCRLRWFNQ 178
                      899*****************************99999999999889999999999985 PP
2Myb_DNA-binding57.23.7e-18185228146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
      Gh_D02G1266 185 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 228
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.038116171IPR017930Myb domain
SMARTSM007178.7E-11120181IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-24121226IPR009057Homeodomain-like
PfamPF002491.2E-10121178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-21122186IPR009057Homeodomain-like
CDDcd001671.10E-9124177No hitNo description
PROSITE profilePS5129427.592180234IPR017930Myb domain
SMARTSM007178.2E-15184232IPR001005SANT/Myb domain
PfamPF002496.0E-15185227IPR001005SANT/Myb domain
CDDcd001679.84E-12187227No hitNo description
Gene3DG3DSA:1.10.10.604.3E-21187233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MNRLSCHSST TPSSSSSSMG MVYPDMGCLS LAPNYGIVVC SSRENERGSS GFRFMENSKT  60
RSFEENHSSD AVEGKGSDYS DGFGDNNMPI NLNSNLNEEN PNENAVSGKE TDSGQSKLCA  120
RGHWRPAEDT KLKELVALYG PQNWNLIAEK LEGRSGKIVA KNSGKRKSKS CRLRWFNQLD  180
PRINRRAFTE EEEERLMQAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREKSSA  240
YRRRKLSQSV YRKMEETPNI VCRDAVTKAE PPPYCLNMSD RRLGIISHYQ FGIFNGGDAG  300
GVNGGSNVSP HMTSEREAIL SSEASYRNGF CAQAQQPPFD FFPDLSNDMM GTFSQTRFWD  360
RPIDEPQVRG YYPQHQHQQL HPSHMMTMQQ SEFLSSQSNI ESTASITPQV SAIESSSSVA  420
GSSNYSHYET ILPPFIDFLG VGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-301212337107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231245RKYREKSSAYRRRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.238551e-93boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527270.0KM052727.1 Gossypium hirsutum LOF-like transcription factor LOF3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693412.10.0PREDICTED: myb protein-like isoform X1
SwissprotQ9SEZ41e-74MY105_ARATH; Transcription factor MYB105
TrEMBLA0A1U8JT190.0A0A1U8JT19_GOSHI; myb protein-like isoform X1
STRINGGorai.005G142000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-74myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]