PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1257
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 387aa    MW: 43106.9 Da    PI: 7.2495
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1257genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.51.1e-52151421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ ++
  Gh_D02G1257  15 MLPGFRFHPTDEELVGFYLKRKIQQRPLSV-ELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSeGS 111
                  579***************************.89***************8888999***************************************9566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + +glkk+Lvfykgra kg+ktdW+mhe+rl
  Gh_D02G1257 112 KCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 142
                  77***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5813175IPR003441NAC domain
PROSITE profilePS5100557.06415175IPR003441NAC domain
PfamPF023651.2E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDERVSDSDK MEEIMLPGFR FHPTDEELVG FYLKRKIQQR PLSVELIKQL DIYKYDPWDL  60
PKLATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG VKTDWMMHEF RLPSLTDSAA TPPKRFLDKC LPANDSWAIC RIFKKTNSTA  180
QRALCHSWVS PIPETSSISD MLSRGSDTPQ LSSDNISLTP KTSSSPVQFN LISNTDLLQA  240
SSAAFSPLDF VPYKPLSQMA PQLPISNGDL TSLIFAPLDQ TPSPAKSAVD VTSVLLNMSS  300
SMLGEYDSTV HFHGGSQDHC TGFSSGTLPH GMQGNMVINN EDHENALLKN LNVTHVDDQW  360
DGIRSIGFPF SLPLPMSVAD AWKPSIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-5451826171NO APICAL MERISTEM PROTEIN
1ut4_B1e-5451826171NO APICAL MERISTEM PROTEIN
1ut7_A1e-5451826171NO APICAL MERISTEM PROTEIN
1ut7_B1e-5451826171NO APICAL MERISTEM PROTEIN
3swm_A1e-5451829174NAC domain-containing protein 19
3swm_B1e-5451829174NAC domain-containing protein 19
3swm_C1e-5451829174NAC domain-containing protein 19
3swm_D1e-5451829174NAC domain-containing protein 19
3swp_A1e-5451829174NAC domain-containing protein 19
3swp_B1e-5451829174NAC domain-containing protein 19
3swp_C1e-5451829174NAC domain-containing protein 19
3swp_D1e-5451829174NAC domain-containing protein 19
4dul_A1e-5451826171NAC domain-containing protein 19
4dul_B1e-5451826171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472270.0KC847227.1 Gossypium hirsutum NAC domain protein NAC50 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016690870.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-119FEZ_ARATH; Protein FEZ
TrEMBLA0A1U8JKR50.0A0A1U8JKR5_GOSHI; protein FEZ-like
STRINGGorai.005G141200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-121NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]