PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G1209
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 139aa    MW: 15304.9 Da    PI: 5.0868
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G1209genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK25.13.5e-0837592648
       RWP-RK 26 gvclTvLKriCRqyGIkRWPhRk 48
                 gv ++vLK+iC ++G++RWPh k
  Gh_D02G1209 37 GVFTSVLKKICHENGLDRWPHCK 59
                 68899***************966 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020422.1E-63759IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MLAVIAILIF KHGLGIPPNS LPSFSFSALI LSDVSQGVFT SVLKKICHEN GLDRWPHCKP  60
DAGLAAAILM QNLSRISMAA TAYSKGELEY AAYLSDQVTY LFDKMEECLG IVLLEALQNG  120
ATVLDLKKLE NLFYYIFDT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459805.14e-68PREDICTED: uncharacterized protein LOC105780177 isoform X1
RefseqXP_012459806.14e-68PREDICTED: uncharacterized protein LOC105780177 isoform X1
TrEMBLA0A0D2V0L21e-66A0A0D2V0L2_GOSRA; Uncharacterized protein
STRINGGorai.005G133400.11e-80(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3624322