PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G1107

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 995aa MW: 109241 Da PI: 5.5643

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G1107	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	601	652	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Gh_D02G1107 601 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 652 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.665	584	672	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	604	652	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-22	889	980	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-24	892	974	No hit	No description
SMART	SM00666	6.9E-24	895	977	IPR000270	PB1 domain
PROSITE profile	PS51745	23.737	895	977	IPR000270	PB1 domain
CDD	cd06407	1.49E-31	896	976	No hit	No description
Pfam	PF00564	1.0E-17	896	976	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MKKMELPFSS KEKGHGYWVP PRAQMEGGEQ FDGTAQNLVS EDPFSFSELM NFDSYAGWCN 60 SPAAIDQTFA SFGLSSYPPL PYTSFDTLHI TGPSSGAFAE AGDALSGMDS SYNFADRMVY 120 QQTDAHFGNS LDSADGELGG RQNNGGTRQS NSLVLANSLV SRSIKRSLDE RMLRALSLFK 180 ESSGGGILAQ VWVPIKHGDQ YMLTTSNQPY LLDQMLSGYR EVSRTYAFPA ELKPGSFPGL 240 PGRVFISRVP EWTSNVIHYS KVEYLRFAHA INHKVRGSIA LPIFEPSEMS CCAVLELVTM 300 KEKHNFDSEI ENVSVALQAV NLRTTAPPRL LPQCLSRNQR AALGEIADVL RAVCHAHRLP 360 LALTWIPCNY TEEAADETTK LRVREGDTGH DGKCVLCIED TACYVNDKGM QDFVHACIEH 420 YLEEGQGIAG KALQSNHPFF SADVKTYDIN DYPLVHHARK FNLNAAVAIR LRSTYTGDDD 480 YILEFFLPVT MKGSSEQQLL LNNLSGTMQR ICRSLRTVSD VEISGEGSNV EFQSGTVPNF 540 PLTSMSRSSE TVLSADSERN SHDRVPLNAS NATSDGKEKD GPPEQAMTRL RRHVEKKRNT 600 AEKNVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ 660 TVLDSVQGVE GGLKFDPATG AFVAAGNVIQ EADTRKTLVF SNRNLPTRVP NPVDQEKSSA 720 PLASCPDGEN SVVKLEEDEC SVGGNNRDAI RSVLIQSTLD FKSVGPDSRS FQAASFGTAT 780 WTCPENATTD SYVEGGQRWG FNNGNLKVED SDCHFVSGSS SSLAAAAAAS ADEIDTRMED 840 DDGIVEHNHQ PISSSMTDSL NGSGSMLHRS SSSSQSFEDA EDTKPKTISV DSSSKITVKA 900 TYKDDTVRFK FKPSAGCFQL YEEVAKRFKI QIGTFQLKYL DDEEEWVLLV SDSDLLECLE 960 ILEYIGSRSL KFQVRDIPCT MGSSGSSNCF LTGGS

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MKKMELPFSS KEKGHGYWVP PRAQMEGGEQ FDGTAQNLVS EDPFSFSELM NFDSYAGWCN  60
SPAAIDQTFA SFGLSSYPPL PYTSFDTLHI TGPSSGAFAE AGDALSGMDS SYNFADRMVY  120
QQTDAHFGNS LDSADGELGG RQNNGGTRQS NSLVLANSLV SRSIKRSLDE RMLRALSLFK  180
ESSGGGILAQ VWVPIKHGDQ YMLTTSNQPY LLDQMLSGYR EVSRTYAFPA ELKPGSFPGL  240
PGRVFISRVP EWTSNVIHYS KVEYLRFAHA INHKVRGSIA LPIFEPSEMS CCAVLELVTM  300
KEKHNFDSEI ENVSVALQAV NLRTTAPPRL LPQCLSRNQR AALGEIADVL RAVCHAHRLP  360
LALTWIPCNY TEEAADETTK LRVREGDTGH DGKCVLCIED TACYVNDKGM QDFVHACIEH  420
YLEEGQGIAG KALQSNHPFF SADVKTYDIN DYPLVHHARK FNLNAAVAIR LRSTYTGDDD  480
YILEFFLPVT MKGSSEQQLL LNNLSGTMQR ICRSLRTVSD VEISGEGSNV EFQSGTVPNF  540
PLTSMSRSSE TVLSADSERN SHDRVPLNAS NATSDGKEKD GPPEQAMTRL RRHVEKKRNT  600
AEKNVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKIQ  660
TVLDSVQGVE GGLKFDPATG AFVAAGNVIQ EADTRKTLVF SNRNLPTRVP NPVDQEKSSA  720
PLASCPDGEN SVVKLEEDEC SVGGNNRDAI RSVLIQSTLD FKSVGPDSRS FQAASFGTAT  780
WTCPENATTD SYVEGGQRWG FNNGNLKVED SDCHFVSGSS SSLAAAAAAS ADEIDTRMED  840
DDGIVEHNHQ PISSSMTDSL NGSGSMLHRS SSSSQSFEDA EDTKPKTISV DSSSKITVKA  900
TYKDDTVRFK FKPSAGCFQL YEEVAKRFKI QIGTFQLKYL DDEEEWVLLV SDSDLLECLE  960
ILEYIGSRSL KFQVRDIPCT MGSSGSSNCF LTGGS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22182	0.0	boll\| ovule

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016693582.1	0.0	PREDICTED: protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1U8JTJ0	0.0	A0A1U8JTJ0_GOSHI; protein NLP8-like
STRING	Gorai.005G126000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]