PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0841
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 340aa    MW: 38570.7 Da    PI: 9.3523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0841genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.79.9e-14128179155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gh_D02G0841 128 QRMTHIAVERNRRKQMNQYLAALRSLMPPS---YVQRGDQASIIGGAIDFVKELE 179
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.64E-14126183No hitNo description
SuperFamilySSF474593.01E-17127197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-11128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-14128193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MALEAVVYPQ DPFPYVFDDF STVGGGVGFD FCLQNEDKAL LGILQQPNHH DLHANWDSSS  60
TNSTMQHTKD QWDPYSSPET CTVDQSLPGP IRFPPLMETP APTTTTTNSR RKRRRTRSSK  120
NKEELENQRM THIAVERNRR KQMNQYLAAL RSLMPPSYVQ RGDQASIIGG AIDFVKELEQ  180
LLQSMEAHKR TTQQPQHDAY SSPFAEFFTF PQFSTRATQC NSNQQQPVAA AAVTSESVAD  240
IEVTMVESHA NLKILSKKQP RQLLKLVAGL QGLRLVVQHL NVTAMNEMAL YSISVKVRTK  300
QPNLCNPFSS FSRRYTLFLN KNQWMKTMTG RGRMPFEHCG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRRR
2110115RKRRRT
3128139RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482630.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T44e-76BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D2NA030.0A0A0D2NA03_GOSRA; Uncharacterized protein
STRINGGorai.005G094800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-70bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]