PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G0722 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 261aa MW: 29435.8 Da PI: 4.7086 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.1 | 1.6e-37 | 30 | 87 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ Gh_D02G0722 30 TAPNCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRG 87 5679**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-27 | 14 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.7E-32 | 31 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 32 | 86 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 34 | 70 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MFILGDQMLQ SDPRVPILPI ERKWKSNVET APNCPRCASA NTKFCYYNNY SLSQPRYFCK 60 GCRRYWTKGG SLRNVPVGGG CRKSRRGKSR RERVEKRDQI SMTDSKNSTS SSDGDSGNQP 120 DIDLALVFAK FLNHNTSFDQ PEVDEIATQE SPNEENNSQK PVVGSIPGSY ILQEMPETSQ 180 MEAFGLQNLL TGDEMVLHED LWSDHDVATT TPDLEWQPLV QLQQFESFPV DEQLKVSANL 240 MNEDWGSFDL SGFGIFSKPS S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 91 | RRGKSRRE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394160 | 3e-89 | GQ394160.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1125 SSR marker CGR6706 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012482447.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
TrEMBL | A0A2P5RLD2 | 0.0 | A0A2P5RLD2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G081000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6462 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 2e-31 | Dof family protein |