PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G0668 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 87aa MW: 10167 Da PI: 10.505 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.6 | 1.4e-05 | 50 | 86 | 10 | 50 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 + RR++i +++ L++l+P +k Ka +L + ++Y Gh_D02G0668 50 KVRREKISERMKYLQDLVPGY----NKITGKAGMLNEIINY 86 78******************8....899**********999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00025 | 3.3E-13 | 5 | 51 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
Gene3D | G3DSA:3.40.50.300 | 3.9E-8 | 6 | 46 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF52540 | 1.87E-5 | 10 | 52 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00328 | 4.3E-14 | 13 | 37 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
PROSITE profile | PS50888 | 11.147 | 40 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PRINTS | PR00328 | 4.3E-14 | 40 | 65 | IPR006689 | Small GTPase superfamily, ARF/SAR type |
SuperFamily | SSF47459 | 3.79E-9 | 40 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.3E-8 | 47 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MLEASKRLVQ HQPTQNPTLK ELSIGMIKFK AFDLGGHQIA RRVWKDYYAK VRREKISERM 60 KYLQDLVPGY NKITGKAGML NEIINYV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.11680 | 1e-52 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109875593 | 1e-52 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX585276 | 9e-62 | JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016693842.1 | 1e-59 | PREDICTED: GTP-binding protein SAR1-like | ||||
Refseq | XP_016693843.1 | 1e-59 | PREDICTED: GTP-binding protein SAR1-like | ||||
Swissprot | P52885 | 2e-24 | SAR1_TOBAC; GTP-binding protein SAR1 | ||||
TrEMBL | A0A1U8JU89 | 3e-58 | A0A1U8JU89_GOSHI; GTP-binding protein SAR1-like | ||||
STRING | Gorai.001G223600.1 | 5e-50 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16325 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 9e-18 | cryptochrome-interacting basic-helix-loop-helix 1 |
Publications ? help Back to Top | |||
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