PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0605

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 357aa MW: 39382.8 Da PI: 6.6772

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0605	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.8	1.1e-33	190	248	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+ Gh_D02G0605 190 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPTIVVTTYEGQHTHP 248 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-35	175	250	IPR003657	WRKY domain
SuperFamily	SSF118290	6.54E-30	182	250	IPR003657	WRKY domain
PROSITE profile	PS50811	33.247	185	250	IPR003657	WRKY domain
SMART	SM00774	3.6E-40	190	249	IPR003657	WRKY domain
Pfam	PF03106	1.4E-27	191	248	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEKKNENNPM ANMRFSDEIP SVFGGGGGGS IFDMAGTSCE GSGGDKWGSL GFMDLLGIHQ 60 DFVAPSLFDS FQPSILPPSS PPLPVFHHHD DDILHEPHTD SKQQHLNHQA GLLSPASTVP 120 ESSEVLNNPA TPNSSSISSS SNELAANDEQ TKAGDDEDKT KKPLKPKKKN PKRQREPRFA 180 FMTKSDIDHL DDGYRWRKYG QKAVKNSPYP RSYYRCTTAG CGVKKRVERS SDDPTIVVTT 240 YEGQHTHPCP IMPRGAIGIA PDSSAFGAPS FIIPQPMYLN HQQQQQQQLQ PYIYNSTPSL 300 NITTASSNII HPPFPGFLQE KPRFSNPNPS ALSHRDHGLL QDIVPSPMRT EAKEEDQ

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEKKNENNPM ANMRFSDEIP SVFGGGGGGS IFDMAGTSCE GSGGDKWGSL GFMDLLGIHQ  60
DFVAPSLFDS FQPSILPPSS PPLPVFHHHD DDILHEPHTD SKQQHLNHQA GLLSPASTVP  120
ESSEVLNNPA TPNSSSISSS SNELAANDEQ TKAGDDEDKT KKPLKPKKKN PKRQREPRFA  180
FMTKSDIDHL DDGYRWRKYG QKAVKNSPYP RSYYRCTTAG CGVKKRVERS SDDPTIVVTT  240
YEGQHTHPCP IMPRGAIGIA PDSSAFGAPS FIIPQPMYLN HQQQQQQQLQ PYIYNSTPSL  300
NITTASSNII HPPFPGFLQE KPRFSNPNPS ALSHRDHGLL QDIVPSPMRT EAKEEDQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-28	183	250	10	77	Probable WRKY transcription factor 4
2lex_A	4e-28	183	250	10	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031072	0.0	KF031072.1 Gossypium hirsutum WRKY transcription factor 6 (WRKY6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482217.1	0.0	PREDICTED: probable WRKY transcription factor 48
Swissprot	Q9FGZ4	3e-59	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	A0A1U8K052	0.0	A0A1U8K052_GOSHI; probable WRKY transcription factor 48
STRING	Gorai.005G068100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5624	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	1e-58	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]