PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0582

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 869aa MW: 97772.7 Da PI: 7.2648

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0582	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	129.8	1e-40	19	104	33	118
CG-1 33 rpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 + + g+++L++rk+ r+frkDGy+wkkkkdgkt++E+he+LKvg + +++yYah+e+n+tf rrcywlL+++le+ivlvhy+e+k Gh_D02G0582 19 TLQGGTIVLFDRKMPRNFRKDGYNWKKKKDGKTIKEAHEHLKVGDKDRIHVYYAHGEDNSTFVRRCYWLLDKSLEQIVLVHYRETK 104 6789*******************************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	56.886	1	109	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.5E-41	6	104	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.4E-34	21	102	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	2.24E-12	317	402	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	9.95E-19	479	613	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.1E-18	485	615	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.582	487	624	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.1E-9	495	582	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.35E-16	508	612	No hit	No description
PROSITE profile	PS50088	11.968	553	585	IPR002110	Ankyrin repeat
SMART	SM00248	6.0E-6	553	582	IPR002110	Ankyrin repeat
SMART	SM00248	1700	592	621	IPR002110	Ankyrin repeat
SMART	SM00015	110	697	719	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.65	701	727	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0018	739	761	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.78	740	764	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.9E-4	741	761	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	69	819	841	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.785	822	848	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 869 aa Download sequence Send to blast
MEDGGCARLV GAEIHGFHTL QGGTIVLFDR KMPRNFRKDG YNWKKKKDGK TIKEAHEHLK 60 VGDKDRIHVY YAHGEDNSTF VRRCYWLLDK SLEQIVLVHY RETKEVSLAT HSNSSLLTDQ 120 STPLLVTEEF DSGIANTYSE EPGESVNVRN HEMKLLEINT LEWDELLVAN GANDSIASRG 180 ADNVSCFDQQ NQMAVNDFSN YGGLISAHNL STETSLLVNS IAPVAQSNNA YLGTTGGVCN 240 QISGGQVNTT SQLKDSCALG IGDSLDFLVN DGLQSQDSFG KWINDFITEP LGSVGDSVLD 300 LSSANDSFTA PEQIFSITEV SPGWAYSTEK TKILVTGVFH QAYQHLAKST LFCVCGDLCT 360 PAEIVQVGVY RCLLSQHSPG LVNLYMSLDG HKPISQVLGF EYCTPLSHDP IFPTEDESRQ 420 EEFQLQMRLA YLLFSTSKSL DILLGNKVSP NILKGVKKFA QKTTNMSDCW KYLMKSFEEN 480 RVSSTQAKDS LLEIALKNRL RDWLLERIIE GGKTNEHDTQ GQGVLHLCAI LGYTWAMYLY 540 SWSGLSLDFR DKHGWTALHW AAFYGREKMV AVLLSAGAKP NLVTDPTTRN PNGYTAADLA 600 SLKGYEGLAA YLSEEALVAH FNDMAVAGNA SGSLQTSRTE ATNFENLNED ELYLKESLAA 660 YRTAADAASR IQTAFRVHSL KLQTKAIESS HPEDETRNIV AAMKIQHAFR NYEIKKKMTA 720 AARIKYSFLT WKMRKDFLNM RRQAIKIQAV FRGFQVRRQY HKILWSVGVL EKAILRWRFK 780 RKGLRGLQIN TAEEVAQRSQ ESDTEEGFFR DCRKQAEERV VKAVVRVQTL FRSKKAQQEY 840 RRMKLAHDMA KLEYENLRGL PSDMDACRH

Sequence ? help Back to Top

Protein Sequence Length: 869 aa Download sequence Send to blast

MEDGGCARLV GAEIHGFHTL QGGTIVLFDR KMPRNFRKDG YNWKKKKDGK TIKEAHEHLK  60
VGDKDRIHVY YAHGEDNSTF VRRCYWLLDK SLEQIVLVHY RETKEVSLAT HSNSSLLTDQ  120
STPLLVTEEF DSGIANTYSE EPGESVNVRN HEMKLLEINT LEWDELLVAN GANDSIASRG  180
ADNVSCFDQQ NQMAVNDFSN YGGLISAHNL STETSLLVNS IAPVAQSNNA YLGTTGGVCN  240
QISGGQVNTT SQLKDSCALG IGDSLDFLVN DGLQSQDSFG KWINDFITEP LGSVGDSVLD  300
LSSANDSFTA PEQIFSITEV SPGWAYSTEK TKILVTGVFH QAYQHLAKST LFCVCGDLCT  360
PAEIVQVGVY RCLLSQHSPG LVNLYMSLDG HKPISQVLGF EYCTPLSHDP IFPTEDESRQ  420
EEFQLQMRLA YLLFSTSKSL DILLGNKVSP NILKGVKKFA QKTTNMSDCW KYLMKSFEEN  480
RVSSTQAKDS LLEIALKNRL RDWLLERIIE GGKTNEHDTQ GQGVLHLCAI LGYTWAMYLY  540
SWSGLSLDFR DKHGWTALHW AAFYGREKMV AVLLSAGAKP NLVTDPTTRN PNGYTAADLA  600
SLKGYEGLAA YLSEEALVAH FNDMAVAGNA SGSLQTSRTE ATNFENLNED ELYLKESLAA  660
YRTAADAASR IQTAFRVHSL KLQTKAIESS HPEDETRNIV AAMKIQHAFR NYEIKKKMTA  720
AARIKYSFLT WKMRKDFLNM RRQAIKIQAV FRGFQVRRQY HKILWSVGVL EKAILRWRFK  780
RKGLRGLQIN TAEEVAQRSQ ESDTEEGFFR DCRKQAEERV VKAVVRVQTL FRSKKAQQEY  840
RRMKLAHDMA KLEYENLRGL PSDMDACRH

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482173.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X3
Refseq	XP_012482174.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X3
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A1U8JLL1	0.0	A0A1U8JLL1_GOSHI; calmodulin-binding transcription activator 5-like isoform X1
STRING	Gorai.005G065700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]