PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0520

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 1173aa MW: 130600 Da PI: 9.2323

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0520	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.9e-10	47	82	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e++++a +++G++ Wk+++ ++ +R+ +++ Gh_D02G0520 47 QWTKEELERFYEAYRKYGKD-WKKVSPMIR-NRSVEMV 82 6***************99.*****.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.687	43	96	IPR017884	SANT domain
SuperFamily	SSF46689	1.05E-10	44	91	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-5	44	92	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.7E-5	47	81	IPR009057	Homeodomain-like
Pfam	PF00249	9.7E-9	47	82	IPR001005	SANT/Myb domain
CDD	cd00167	5.10E-7	48	82	No hit	No description
SMART	SM01135	6.0E-56	636	737	IPR033471	DIRP domain
Pfam	PF06584	7.1E-33	636	736	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1173 aa Download sequence Send to blast
MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGKRKRKL SDMLGPQWTK EELERFYEAY 60 RKYGKDWKKV SPMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD 120 SEQESNEGMG ISRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSGCLS LLKRRRSESR 180 PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG 240 SPQVSRTPNR KAETPSPVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA 300 KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHQED TKEACSGTEE GQQLCEFKGN 360 FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EGTAFDALQT LADLSLMMPE TADTESSVQY 420 KEEKNEVEKT KLKGNHLVPG AKGSASKASR HGKLFGHDVR ANPEAKEAHP ANVGMRKRRQ 480 KSSPYKLQIP KDETDAVSQL GESPNIEASG EVKNLLSKGK LSNNVGHPKQ GKFVRPPEHA 540 SSSTDQGRDL NNSAPSTIQV SSVNQVNLPT KIRSKRKTDV REPAIRKGTK SSDNVVKGKI 600 SGPVTLFHDG ALDLKEKLCN FLCSYQARRW CAFEWFYSTI DYPWFAKREF VEYLDHVGLG 660 HIPRLTRVEW GVIRSSLGKP RRFSEQFLKE EREKLNQYRE SVRRHYAELR AGIGEGLPTD 720 LARPLSVGQR VIAVHPKTRE IHDGSVLTVD YSRYRIQFDS PELGVEFVMD VDCMPLNPME 780 NLPASLSRQN AAIRKFVENY NELKMNGQSK ESKMEENIKF MQCDNLENAN SPSRTSPSTF 840 SVGNLSQPVK VDSSSPNLQL KIGPTETVYT QAINSQPSAV SLVQAREADV EALSQLTRAL 900 DKKHLQEAIV SELRRMNDEV LENQKGGDNH IKDSDSFKKQ YAAVLLQLNE VSSALLCLRQ 960 RNTYQGTSSG KLLNPSGKIG EQGSQLSSFD PMHHVQESVS HVAEIVESSR RKARSMVDAA 1020 LKAMSSLRKG GKNIERIEDA IDFVNNQLSL NEFSAPAPRS AAPVDSVRSH DNLTACSSYP 1080 FATSHIPEMK LQNLSDQDEL KIPSDLISQC VATLLMIQKC TERQFPPGDV AEVLDSAVTS 1140 LKPCCSQNLP IYTEIQKCMG IIRNQILALV PTS

Sequence ? help Back to Top

Protein Sequence Length: 1173 aa Download sequence Send to blast

MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGKRKRKL SDMLGPQWTK EELERFYEAY  60
RKYGKDWKKV SPMIRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYSVMGGSD  120
SEQESNEGMG ISRKPQKRSR GKIRDQPSKS SDKPLPDLLQ FPSANSGCLS LLKRRRSESR  180
PRAVGKRTPR VPISFSHDKN KGERYFSPIR QGMKLKVDAV DDDVAHEVAL ALTEASQRGG  240
SPQVSRTPNR KAETPSPVIN SERMNADSET TSAKIHGSEV DEDACELSLG STEADNADYA  300
KDKNYSRNIE GTGTVEVQQK GKRYYRRKPE IEESVNHQED TKEACSGTEE GQQLCEFKGN  360
FDCEVEDAKT SRASIKGPRK RSKKVLFEGV EGTAFDALQT LADLSLMMPE TADTESSVQY  420
KEEKNEVEKT KLKGNHLVPG AKGSASKASR HGKLFGHDVR ANPEAKEAHP ANVGMRKRRQ  480
KSSPYKLQIP KDETDAVSQL GESPNIEASG EVKNLLSKGK LSNNVGHPKQ GKFVRPPEHA  540
SSSTDQGRDL NNSAPSTIQV SSVNQVNLPT KIRSKRKTDV REPAIRKGTK SSDNVVKGKI  600
SGPVTLFHDG ALDLKEKLCN FLCSYQARRW CAFEWFYSTI DYPWFAKREF VEYLDHVGLG  660
HIPRLTRVEW GVIRSSLGKP RRFSEQFLKE EREKLNQYRE SVRRHYAELR AGIGEGLPTD  720
LARPLSVGQR VIAVHPKTRE IHDGSVLTVD YSRYRIQFDS PELGVEFVMD VDCMPLNPME  780
NLPASLSRQN AAIRKFVENY NELKMNGQSK ESKMEENIKF MQCDNLENAN SPSRTSPSTF  840
SVGNLSQPVK VDSSSPNLQL KIGPTETVYT QAINSQPSAV SLVQAREADV EALSQLTRAL  900
DKKHLQEAIV SELRRMNDEV LENQKGGDNH IKDSDSFKKQ YAAVLLQLNE VSSALLCLRQ  960
RNTYQGTSSG KLLNPSGKIG EQGSQLSSFD PMHHVQESVS HVAEIVESSR RKARSMVDAA  1020
LKAMSSLRKG GKNIERIEDA IDFVNNQLSL NEFSAPAPRS AAPVDSVRSH DNLTACSSYP  1080
FATSHIPEMK LQNLSDQDEL KIPSDLISQC VATLLMIQKC TERQFPPGDV AEVLDSAVTS  1140
LKPCCSQNLP IYTEIQKCMG IIRNQILALV PTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	474	479	MRKRRQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269\|PubMed:15246533}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482094.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A0D2SBK3	0.0	A0A0D2SBK3_GOSRA; Uncharacterized protein
STRING	Gorai.005G058900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12714	24	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]