PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D02G0519

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 459aa MW: 49302.5 Da PI: 7.7926

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D02G0519	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	44	67	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C +++rtG+C yG+rC+F+H+ Gh_D02G0519 44 EADCIYYLRTGFCGYGSRCRFNHP 67 689********************8 PP
2	zf-CCCH	38.2	2.5e-12	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtC++G++Ck++H++ Gh_D02G0519 90 QPVCQYYMRTGTCRFGSSCKYHHPK 114 689********************96 PP
3	zf-CCCH	38.3	2.2e-12	136	159	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+++++tG Ck+G +C+F+H+ Gh_D02G0519 136 EKECSYYMKTGRCKFGVTCRFHHP 159 689********************8 PP
4	zf-CCCH	37.8	3.2e-12	294	317	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+++++tG Ck+G++Ck++H+ Gh_D02G0519 294 QPECQYYLKTGDCKFGSSCKYHHP 317 799********************9 PP
5	zf-CCCH	28.2	3.2e-09	340	364	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C+++++ Ck+G+ CkF H++ Gh_D02G0519 340 APPCSHYSQHAVCKFGPACKFDHPM 364 689********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	9.9E-6	41	68	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.192	41	69	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	44	70	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-9	44	67	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-5	47	67	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.9E-7	87	114	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.277	87	115	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-10	90	114	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	90	115	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.9E-5	92	113	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.4E-5	133	160	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.929	133	161	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-6	134	161	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-9	136	159	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-4	139	159	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-5	291	318	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.817	291	319	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-6	294	319	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-9	294	317	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.3E-4	297	317	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0021	337	364	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.695	337	365	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-6	340	364	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.92E-5	341	368	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.9E-4	342	367	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MEWGPESDLE PEWTSSGPET GLEEPIPRLE LGVEPKSYPE RPNEADCIYY LRTGFCGYGS 60 RCRFNHPHDR AMVMGPGISS IGEYPERAGQ PVCQYYMRTG TCRFGSSCKY HHPKDGGGFV 120 IHVPLNSYGY PLRLGEKECS YYMKTGRCKF GVTCRFHHPI SSVVQVSTPY STPQVPHVPA 180 PTLYSMVQSP SSLSSQQYGV VMARPPLMPG SYVQGPYGSL LLSPSMVSFP SWNPYPGLVN 240 SSTQPSVGSR SVFGGTPLSP LAPAYTRSYQ LVSSSVGSSS SNRKEHLFPE IPNQPECQYY 300 LKTGDCKFGS SCKYHHPLEV VAPKSDVILS TLGLPLRPGA PPCSHYSQHA VCKFGPACKF 360 DHPMEQLSYS PSTSSLSDIP VGSTIATLAP SSDLRPKLLS GSGKDSDPAV MSSSVSSSSE 420 SIGLVFSEGA AIPPSSTQQS GPSSGPSAGR GITKAHTSN

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MEWGPESDLE PEWTSSGPET GLEEPIPRLE LGVEPKSYPE RPNEADCIYY LRTGFCGYGS  60
RCRFNHPHDR AMVMGPGISS IGEYPERAGQ PVCQYYMRTG TCRFGSSCKY HHPKDGGGFV  120
IHVPLNSYGY PLRLGEKECS YYMKTGRCKF GVTCRFHHPI SSVVQVSTPY STPQVPHVPA  180
PTLYSMVQSP SSLSSQQYGV VMARPPLMPG SYVQGPYGSL LLSPSMVSFP SWNPYPGLVN  240
SSTQPSVGSR SVFGGTPLSP LAPAYTRSYQ LVSSSVGSSS SNRKEHLFPE IPNQPECQYY  300
LKTGDCKFGS SCKYHHPLEV VAPKSDVILS TLGLPLRPGA PPCSHYSQHA VCKFGPACKF  360
DHPMEQLSYS PSTSSLSDIP VGSTIATLAP SSDLRPKLLS GSGKDSDPAV MSSSVSSSSE  420
SIGLVFSEGA AIPPSSTQQS GPSSGPSAGR GITKAHTSN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481175.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 58
Swissprot	Q6NPN3	1e-140	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A0D2RG90	0.0	A0A0D2RG90_GOSRA; Uncharacterized protein
STRING	Gorai.005G058800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1779	27	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-134	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]