PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G0429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 137aa MW: 15249.8 Da PI: 8.8135 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.7e-20 | 17 | 68 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd + + +r++lg+f taeeAa+a+++a+ +++g+ Gh_D02G0429 17 RYRGVRRRP-WGKFAAEIRDS---NrHGARVWLGTFNTAEEAARAYDRAAYSMRGH 68 59*******.**********4...3234**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 17 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-34 | 17 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.7E-16 | 17 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.49E-16 | 17 | 75 | No hit | No description |
PROSITE profile | PS51032 | 23.762 | 17 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-23 | 17 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.1E-12 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.1E-12 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MEGSSSKGKE EGGETIRYRG VRRRPWGKFA AEIRDSNRHG ARVWLGTFNT AEEAARAYDR 60 AAYSMRGHLA ILNFPQEYPM GSGGATAYRG SSSAASSSSS SSSSMDQRGK QVFEIEYLDD 120 KLLEELLENE EKNKEKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-41 | 8 | 137 | 5 | 130 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616690 | 0.0 | JX616690.1 Gossypium hirsutum clone NBRI_GE61537 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481967.1 | 4e-95 | PREDICTED: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 1e-43 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A0D2N818 | 8e-94 | A0A0D2N818_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G049200.1 | 1e-94 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 5e-27 | ERF family protein |
Publications ? help Back to Top | |||
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