PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G0187 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 29599.1 Da PI: 5.1995 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 87.5 | 2.5e-27 | 3 | 132 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 GfrF+Ptdee++ e L +kv+g++ ++++++i + diy++eP++L+ + ++ +++e y++++r++ + + ++ +g Wkat + k+v s Gh_D02G0187 3 LTGFRFSPTDEEVI-EILGQKVSGNTsMTAFDFIIQKDIYDFEPQELHgSesTIGLNKNERYYYCRRETDS------REVMGRGWWKATSHLKAVSSP 93 57************.88999*999997888899**************84344555588899*****98753......447889*************** PP NAM 96 kgelvglkktLvfy......kgrapkgektdWvmheyrl 128 +ge++g k+ L+f+ +g+++ + ktdW+mhey l Gh_D02G0187 94 NGEVMGYKRPLTFHrfkdniQGNRKGAIKTDWIMHEYGL 132 **************88877779999999*********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 32.056 | 2 | 147 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.27E-30 | 3 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.7E-15 | 4 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVLTGFRFSP TDEEVIEILG QKVSGNTSMT AFDFIIQKDI YDFEPQELHG SESTIGLNKN 60 ERYYYCRRET DSREVMGRGW WKATSHLKAV SSPNGEVMGY KRPLTFHRFK DNIQGNRKGA 120 IKTDWIMHEY GLQSIHTEWR LCKIKYKGKE KVEEDMTPME KTLHSNNKTL LTSFEAKDGS 180 SSRSNSIAPM QLELAFEQPP LTQPILPVST DINYYYDSYC WSNSNIYEDH QLADQLDTLS 240 EQPFSDLWSW DDYH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-14 | 5 | 150 | 18 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX586870 | 3e-55 | JX586870.1 Gossypium hirsutum clone NBRI_GE20805 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016722843.1 | 0.0 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A1U8MB78 | 0.0 | A0A1U8MB78_GOSHI; NAC domain-containing protein 83-like | ||||
STRING | Gorai.005G020600.1 | 1e-177 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16224 | 6 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 9e-19 | NAC domain containing protein 94 |