PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0149
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 578aa    MW: 67121.2 Da    PI: 5.549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0149genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.33.8e-1681322128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy..kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  p G++F+P+ +e+  ++L + v+g+ l+  + + +vdiy  + ePw++    k++++ ++ F+k +kk+    r  r++ sg W a   +kev++++g
  Gh_D02G0149   8 PYGYQFRPSRQEIFIRFLFPIVNGECLPS-SPLIQVDIYgeNKEPWNIF-D-KNSKTPYWVFTKLKKKS--RLRIDRTAGSGCWLARN-TKEVYDNGG 99 
                  89************************999.67889999933469****6.2.23344555666666654..57***********9875.699***9** PP

          NAM  98 elvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +l g  k ++f   + +  +  + +W+mhe++l
  Gh_D02G0149 100 KLLGYHKYFTFSckNDEWMNQDNGHWIMHEFSL 132
                  ***********9643455677899*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-223148IPR003441NAC domain
PROSITE profilePS5100524.5487148IPR003441NAC domain
PfamPF023655.5E-108132IPR003441NAC domain
PfamPF045027.6E-33366487IPR007590CWC16 protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MLNSSPVPYG YQFRPSRQEI FIRFLFPIVN GECLPSSPLI QVDIYGENKE PWNIFDKNSK  60
TPYWVFTKLK KKSRLRIDRT AGSGCWLARN TKEVYDNGGK LLGYHKYFTF SCKNDEWMNQ  120
DNGHWIMHEF SLKREESNDY VICEIRNKNA ADLDSDSKLN TKKRRILSSE KNHEEMNLPS  180
KPNDEEMGLI SIFSESGHKD LSSDVTFETR TRNDGLDLNL NLKLNDEDLR LYVNHEDPKI  240
INKDVAGRNL NLSKLESDDE EIESISRSSN HEDLSSDVTF EIRNRNDDLG LNLNLKSNDE  300
DGKKRYLRQN IPIENLCDLR RWEPAGLRSV EASEGPAAKE STDEGSEYAS DEYTLQDMRD  360
ILRDPKFYFK CTNCFAEMTT KTDPQNKNYV VESGPTRNFE PWRAEDEEVE RERNRRKSQR  420
MGDAMKSLEN RTLDWKREID ILAALDKMKS RKSRHATVSV DSMLDALQRT AAEKAAMFLT  480
LMSSLMQKPK EFVPRISDDV FIYDEDLNCL SNGLNRRKVS EESSSNPARF KSSVVKKKPK  540
IQIQESQLIF LIILDYDMEA QTFNLARYTD ASSFSQLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzg_Y1e-1636646475173Coiled-coil domain-containing protein 94
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.26822e-86boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632574.11e-174PREDICTED: NAC domain-containing protein 2-like
TrEMBLA0A0D2N6R90.0A0A0D2N6R9_GOSRA; Uncharacterized protein
STRINGGorai.005G016000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3620422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-10NAC domain containing protein 47