PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D02G0126
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 968aa    MW: 107451 Da    PI: 5.716
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D02G0126genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.82.4e-29576626252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++
  Gh_D02G0126 576 EKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 626
                  89***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.859563646IPR003035RWP-RK domain
PfamPF020423.4E-26578626IPR003035RWP-RK domain
SuperFamilySSF542772.29E-20860951No hitNo description
SMARTSM006668.8E-19868950IPR000270PB1 domain
PROSITE profilePS5174517.042868950IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.9E-23868950No hitNo description
PfamPF005644.7E-15869949IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MEVGEQFGGN TRNLLFEDPF NYSELMNLDA YGGWCSGSAA TDQMFASSGF FSYPSMSHAS  60
FDSTNSIGQS SSTYVESGYA LGGMDSSYNC ADRTVFRQTD EHFSNTVDSK GVELGVRQHT  120
DGNKQNDTSY LGHLLISRPI GRSLDEKMLR ALSLFKDLSG EGILAQVWVP IKHGDQYMLT  180
TSDQPYLLDQ MLLGYREVSR TYTFSAEQKP GSFPGLPGRV FLSRVPEWTS NVIHYSKAEY  240
LRITHAVNHE VRGSIGLPVF QPPEMSCCAV LELVTTKEKP NFHSEMEHVC RALEAVNLRT  300
LARPRFLPQC LSKNQRAALA EITDVLRAVC HAHSLPLALT WIPCNYTEEA ENEYIKMRVR  360
EGNKSWDGKC VLCIEDTACY VNEREMQDFV HACVEHYLEG GQGIAGKALQ SNHPFFSADV  420
KTYDVSDYPL VHHARKFNLN AAVAIRLRST YTSDDDYILE LFLPINMKGS LEQQLLLNNL  480
SGTMQRICRT LRTVSDAEIV GERSKFEFQR VTVPTFPSMA MSQRSSETAL SADSDMNSNH  540
SIPFNESNSI SDGKEADGPP EKAISGLQRP KRSTTEKNVS FSVLQQYFSG SLKDAAKSIG  600
VCPTTLKRIC RQHGISRWPS RKINKVNRSL KKIQTVLDSV QGVDGGLKFD PATGEFVAAG  660
TVIQECNPEK TLMFSNNNLP VGISEAFNHE KSSAPLASCL DGEDSVVKWD ENECSFGGNN  720
NEAARSVLIP SICQEVKKSI VPLNDCSEDS KSVAGAASWI CPENATTGSY FRQGDDKWGL  780
NKGNPKVEVA NCHFVSLNSS SLAATDEMDI RKEGDDGIDE YNRQHTSSSM TDTSNVSGSR  840
LHGSSSSSEK SMEAKNSRMK TCVDSSSKIT IKATYKENTV RFKFEPSAGC FQVYEEVAKR  900
FKVQNGTFQL NYLDDEEEWV MLVSDSDLHE CLEIMEYVGT RSVKFQVRDV PFTMGSSSSS  960
NCFLSRNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6227512e-50JX622751.1 Gossypium hirsutum clone NBRI_GE69618 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016684412.10.0PREDICTED: protein NLP9-like
RefseqXP_016684416.10.0PREDICTED: protein NLP9-like
RefseqXP_016684422.10.0PREDICTED: protein NLP9-like
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A1U8J2490.0A0A1U8J249_GOSHI; protein NLP9-like
STRINGEOY047740.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43500.20.0Nin-like family protein
Publications ? help Back to Top
  1. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]