PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D02G0116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 155aa MW: 17145.6 Da PI: 7.2898 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.4 | 0.00014 | 49 | 84 | 14 | 54 |
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 d++ ++++ L++l+ + +K + a++L +A+ YI+ L Gh_D02G0116 49 DQVSERIAALQQLVSPY-----GKTDTASVLLEAMGYIRFL 84 78999*********999.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.69 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.72E-5 | 38 | 89 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-10 | 44 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-7 | 45 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MQMQALCSCE EAIDIGTMME NKRNPFSVDH TGFTSLASKR QKATKEKKDQ VSERIAALQQ 60 LVSPYGKTDT ASVLLEAMGY IRFLHEQVKV LSAPYLQTIP ANSLQDDDQY SLRNRGLCLA 120 PVSCTVGLAR SNGADIWAPV KTTSPKFDEV ISQFN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.4315 | 0.0 | boll |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU265860 | 3e-81 | GU265860.1 Gossypium hirsutum chromosome 14 SNP marker NG0207159 associated with bacterial blight resistance genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481480.1 | 1e-114 | PREDICTED: transcription factor bHLH113-like isoform X1 | ||||
Refseq | XP_016684586.1 | 1e-114 | PREDICTED: transcription factor bHLH113-like isoform X3 | ||||
Swissprot | Q7XJU2 | 3e-58 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A0D2N6J4 | 1e-113 | A0A0D2N6J4_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8J2L5 | 1e-113 | A0A1U8J2L5_GOSHI; transcription factor bHLH113-like isoform X3 | ||||
STRING | Gorai.005G012400.1 | 1e-114 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3316 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 1e-60 | bHLH family protein |
Publications ? help Back to Top | |||
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