PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G2078
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 478aa    MW: 53659.7 Da    PI: 9.1481
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G2078genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08347394448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++q+G g+W+ I + +      Rt+ +++++w+++l
      Gh_D01G2078 347 WTLAEVIKLVDGIAQYGVGRWTDIKKLLFassAYRTPVDLRDKWRNLL 394
                      ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.078339398IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-11339398IPR009057Homeodomain-like
SMARTSM007171.3E-8343396IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-15345404IPR009057Homeodomain-like
CDDcd116601.05E-17345395No hitNo description
PfamPF002499.8E-7347394IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MRTERKPHLI KKPADAKRQS VDESLGPGLK DEATEVEHLL VEPKSERVSV DRVFCFGKEN  60
IEKHLKMEDF SCAFDYGWKI GSGGLDSIHG QGGDDLKLEV LDGLLDEVDD IQAAHDLSSA  120
CEDFLLDIEF PEKFSELDCG PHVGSNLRNS SSESHSPGGS SNSVGGMSES SIVTVQESNS  180
KNGVLGKMVN CDIHHTIRSE CGCQAPVMET IRPSKEHAQD FVESDDEKPL VSFIVSNKKV  240
KSSIKVTKGG TLLRQKRLRK PTKRYIEEFS RNSTTSGKNK CLKVRSQEEF SQVPSESQSR  300
RGRPKKIMPK MEFESDCELS ASESEDECKR TKRFKTACDR RKHQRMWTLA EVIKLVDGIA  360
QYGVGRWTDI KKLLFASSAY RTPVDLRDKW RNLLRSSSAH KHNRKELQGE TNVKHYVRPL  420
PKTVVCRIRE LATIHPYPKA RSPNLSSINS DPSSKQPTTT KAAPINTHGR NLRGKKCN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.9470.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016687421.10.0PREDICTED: uncharacterized protein LOC107905305 isoform X1
RefseqXP_016687422.10.0PREDICTED: uncharacterized protein LOC107905305 isoform X1
TrEMBLA0A1U8JAU10.0A0A1U8JAU1_GOSHI; uncharacterized protein LOC107905305 isoform X1
STRINGGorai.002G247800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-24TRF-like 6