PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D01G2066 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 29115.2 Da PI: 8.4683 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+d ++++G+g +W + +++ g++R++k+c++rw++yl Gh_D01G2066 14 KGPWSPEEDAMLKDFIHKHGTGgNWISLPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 39.9 | 9.7e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+++ +Ed ++ ++++ G++ W+ Ia+ ++ gRt++++k++w++ Gh_D01G2066 69 GKFSDDEDRIICNLFASIGSR-WSIIAANLP-GRTDNDIKNYWNT 111 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.247 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.23E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.31E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.599 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRAPCCDIS NVKKGPWSPE EDAMLKDFIH KHGTGGNWIS LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGK FSDDEDRIIC NLFASIGSRW SIIAANLPGR TDNDIKNYWN TKLKKKLFGM 120 VPHSYSSSSF SNITTAGSVL QSQQHRGFSA NRLGRNKDSE FGYGGGSGGN HGDQQIGNLE 180 SFFYNEGDKN DHHNLMYSSR DIANGFSSSV GSISSSFDSN FLYGETTSLD YGIERINQQI 240 SSTSSSCEGF GFYQHNANDY PC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-25 | 9 | 117 | 2 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ115644 | 0.0 | HQ115644.1 Gossypium hirsutum DNA-binding transcription factor blind 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016687436.1 | 0.0 | PREDICTED: transcription factor RAX2-like | ||||
TrEMBL | A0A1U8JAV5 | 0.0 | A0A1U8JAV5_GOSHI; transcription factor RAX2-like | ||||
STRING | Gorai.002G246700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-73 | myb domain protein 36 |